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[178620_at] 7TM chemoreceptor, sri family

Description F15H9.2 /REP_DB=WormBase Gene ID /WP=CE20687 /TR=O45372 /GB=CAB04119.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 19      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 12.1
(-3)
A 		42.3
(-0.9)
A 		30
(-1.8)
A 		100.4
(3)
A 		88
B 48.9
(-2.2)
A 		115.3
(3)
A 		38.2
(-3)
A 		56.4
(-1.6)
A 		77
C 80.1
(0.1)
A 		33.2
(-3)
A 		59
(-1.3)
A 		124.4
(3)
A 		91
avr 47
(-2.5) 		63.6
(-0.5) 		42.4
(-3) 		93.7
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 73.9
(3)
A 		21.7
(-1.5)
A 		50.5
(1)
A 		19.2
(-1.8)
A 		64.1
(2.1)
A 		5
(-3)
A 		69
B 55.3
(1.8)
A 		59
(2.3)
A 		64.4
(3)
A 		17.2
(-3)
A 		55.9
(1.9)
A 		54.5
(1.7)
A 		47
C 32.3
(-0.1)
A 		47.2
(1.8)
A 		10.1
(-3)
A 		38.3
(0.7)
A 		15
(-2.4)
A 		56
(3)
A 		46
avr 53.8
(3) 		42.6
(0.7) 		41.7
(0.5) 		24.9
(-3) 		45
(1.2) 		38.5
(-0.2) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 4.4
(-3)
A 		9.2
(-0.2)
A 		7.8
(-1)
A 		14.7
(3)
A 		10
B 15.6
(-0.9)
A 		28.5
(3)
A 		8.8
(-3)
A 		12
(-2)
A 		20
C 26.5
(3)
A 		9.6
(-3)
A 		20.6
(0.9)
A 		21
(1)
A 		17
avr 15.5
(2.3) 		15.8
(2.8) 		12.4
(-3) 		15.9
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 13.6
(1.1)
A 		7.7
(-0.8)
A 		11
(0.2)
A 		4.9
(-1.8)
A 		19.3
(3)
A 		1.2
(-3)
A 		18
B 19.2
(1.8)
A 		19.6
(2)
A 		15.6
(0.6)
A 		4.6
(-3)
A 		22.7
(3)
A 		20.3
(2.2)
A 		18
C 12
(0.5)
A 		14.4
(1.4)
A 		2.6
(-3)
A 		7.7
(-1.1)
A 		4.8
(-2.2)
A 		18.8
(3)
A 		16
avr 14.9
(2.6) 		13.9
(2) 		9.7
(-0.6) 		5.7
(-3) 		15.6
(3) 		13.4
(1.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1937
Sequence Type Exemplar sequence
Representative Public ID F15H9.2 NCBI
Target Description F15H9.2 /REP_DB=WormBase Gene ID /WP=CE20687 /TR=O45372 /GB=CAB04119.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060671 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-15) (sri-15) mRNA, complete cds. 11/11 None
SNAP00000007309 ENSEMBL cdna:SNAP chromosome:CEL140:I:12159143:12161756:-1 11/11 None
GENEFINDER00000007324 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12159143:12162455:-1 11/11 None
F15H9.2 ENSEMBL cdna:known chromosome:CEL140:I:12159143:12162455:-1 gene:F15H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12159073-12162386(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-15
Ensembl F15H9.2
Entrez Gene 184549 Entrez gene
SwissProt O45372 EMBL-EBI
WormBase CE20687 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04119 Hypothetical protein F15H9.2 [Caenorhabditis elegans] ref|NP_493072.1| Serpentine Receptor, class I family member (sri-15) [Caenorhabditis elegans] 1.0E-176
blast CAB04119 Hypothetical protein F15H9.2 [Caenorhabditis elegans] ref|NP_493072.1| Serpentine Receptor, class I family member (sri-15) [Caenorhabditis elegans] 1.0E-126
blast CAB04117 Hypothetical protein F15H9.3 [Caenorhabditis elegans] ref|NP_493070.2| Serpentine Receptor, class I family member (sri-17) [Caenorhabditis elegans] 1.0E-113
blast CAB04118 Hypothetical protein F15H9.4 [Caenorhabditis elegans] ref|NP_493071.1| Serpentine Receptor, class I family member (sri-16) [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-59
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.1E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493072.1 7 15-37,58-80,95-114,135-152,191-213,238-260,275-297
F15H9.2 7 15-37,58-80,95-114,135-152,191-213,238-260,275-297
SNAP00000007309 5 15-37,58-80,115-137,162-184,199-221
GENEFINDER00000007324 7 15-37,58-80,95-114,135-152,191-213,238-260,275-297
Sequence
Target Sequence 
>C. ELEGANS:178620_AT
gaaaactggccacaatgcacgcaatggctaaaattttttgcttttgaagtctacgattat
atgctgaatccatggcttgctgttgttgggataggagccgttgctctggtttttatggtt
tatggctacggattgggtctcggcacgcacacaatgatgattctgcagagatttcgaaaa
tccatgtctcgtcaaacatatcaacagcataaaactgcacttttcagtttagtaatgcag
ctgttgattcctggagttttgattatagtaccacttggagtttgtatgtttgttgtagtt
actggagaagttggattgcaagaggtcgccaccaacacaatgttccttgttggctctcat
tcaatgtgctccagtgcagttatgatttccagtaatccaaggcatcggaaatatcttaaa
gaaaaaactatacaaattttgaaaattaccccaaatactcgacgaatcgccaactccgta
gagccgagccaccggacaaatagtttggtccctccgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAACTGGCCACAATGCACGCAAT 654 353 511 Antisense
GAGCCGTTGCTCTGGTTTTTATGGT 590 385 605 Antisense
TTATGGCTACGGATTGGGTCTCGGC 154 607 630 Antisense
CTCGGCACGCACACAATGATGATTC 38 233 649 Antisense
TTGCAAGAGGTCGCCACCAACACAA 412 699 826 Antisense
AACACAATGTTCCTTGTTGGCTCTC 630 135 844 Antisense
TTGGCTCTCATTCAATGTGCTCCAG 427 709 860 Antisense
GCTCCAGTGCAGTTATGATTTCCAG 154 299 878 Antisense
AAATACTCGACGAATCGCCAACTCC 643 113 963 Antisense
AGAGCCGAGCCACCGGACAAATAGT 139 69 990 Antisense
GACAAATAGTTTGGTCCCTCCGAAT 637 349 1005 Antisense
Sequence Source Affymetrix Proprietary Database