[Home] | [Total List]

[178619_at]

Description C55A1.6 /REP_DB=WormBase Gene ID /WP=CE08992 /TR=O17712 /GB=CAB04006.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 08      4grp_total > 39      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 296
(3)
P 		90.8
(-2.5)
P 		70.7
(-3)
P 		193.7
(0.3)
P 		225
B 288.2
(3)
P 		124
(-1)
P 		42.5
(-3)
P 		123
(-1)
P 		246
C 292.2
(3)
P 		96.7
(-1.7)
P 		41.9
(-3)
P 		129.9
(-0.9)
P 		250
avr 292.1
(3) 		103.8
(-1.7) 		51.7
(-3) 		148.9
(-0.6) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 385.8
(3)
P 		171.4
(-1.9)
P 		229.8
(-0.6)
P 		160.1
(-2.1)
P 		153.4
(-2.3)
P 		122.4
(-3)
P 		263
B 552.4
(3)
P 		143.6
(-3)
P 		237.3
(-1.6)
P 		185.3
(-2.4)
P 		156.2
(-2.8)
P 		151.6
(-2.9)
P 		409
C 544.5
(3)
P 		206.9
(-2)
P 		136.7
(-3)
P 		251.7
(-1.3)
P 		175.5
(-2.4)
P 		201.8
(-2)
P 		408
avr 494.2
(3) 		174
(-2.7) 		201.3
(-2.2) 		199
(-2.3) 		161.7
(-2.9) 		158.6
(-3) 		336
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 107.8
(3)
P 		19.7
(-2.9)
P 		18.5
(-3)
P 		28.4
(-2.3)
P 		89
B 91.9
(3)
P 		30.6
(-1.5)
P 		9.8
(-3)
P 		26.2
(-1.8)
P 		82
C 96.7
(3)
P 		27.8
(-2)
P 		14.6
(-3)
P 		21.9
(-2.5)
P 		82
avr 98.8
(3) 		26
(-2.2) 		14.3
(-3) 		25.5
(-2.2) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 71.1
(3)
P 		60.9
(1.5)
P 		50.1
(-0.1)
P 		40.6
(-1.4)
P 		46.3
(-0.6)
P 		29.8
(-3)
P 		41
B 192.2
(3)
P 		47.8
(-3)
P 		57.6
(-2.6)
P 		49.1
(-2.9)
P 		63.5
(-2.3)
P 		56.5
(-2.6)
P 		144
C 201.8
(3)
P 		63.1
(-2)
P 		34.8
(-3)
P 		50.6
(-2.4)
P 		56.8
(-2.2)
P 		67.6
(-1.8)
P 		167
avr 155
(3) 		57.3
(-2.4) 		47.5
(-3) 		46.8
(-3) 		55.5
(-2.5) 		51.3
(-2.8) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14707
Sequence Type Exemplar sequence
Representative Public ID C55A1.6 NCBI
Target Description C55A1.6 /REP_DB=WormBase Gene ID /WP=CE08992 /TR=O17712 /GB=CAB04006.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074492(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074492 NCBI Caenorhabditis elegans C55A1.6 (C55A1.6) mRNA, complete cds. 11/11 None
SNAP00000022799 ENSEMBL cdna:SNAP chromosome:CEL140:V:15650701:15651388:1 11/11 None
GENEFINDER00000022808 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15650701:15651388:1 11/11 None
C55A1.6 ENSEMBL cdna:known chromosome:CEL140:V:15650701:15651388:1 gene:C55A1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15650700-15651388(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C55A1.6
Entrez Gene 183827 Entrez gene
WormBase CE08992 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04006 Hypothetical protein C55A1.6 [Caenorhabditis elegans] ref|NP_506893.1| C55A1.6 [Caenorhabditis elegans] 3.0E-44
blast CAE60932 Hypothetical protein CBG04655 [Caenorhabditis briggsae] 6.0E-29
blast CAE60946 Hypothetical protein CBG04674 [Caenorhabditis briggsae] 2.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506893.1 1 5-27
C55A1.6 1 5-27
SNAP00000022799 1 5-27
GENEFINDER00000022808 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:178619_AT
tcattattttcttcgccgcaattacaattgcaacgtcggccgctccagttaactttccaa
ctgtagaagaatcaaaaaccgaactgaaagatgccggaatgactcaggccagtatcgatc
agctttcagcgttcactcaaagatttgcgaccggatacccagtcgttcaatcaaacaaag
aagcttccgacaagtttatcgctgattactcggctgatgttcaaaactttgtcaagtcaa
tgaacgagaaggatcagactctttatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTATTTTCTTCGCCGCAATTAC 553 619 29 Antisense
AATTACAATTGCAACGTCGGCCGCT 405 175 48 Antisense
CCGCTCCAGTTAACTTTCCAACTGT 200 261 68 Antisense
GATGCCGGAATGACTCAGGCCAGTA 505 413 118 Antisense
TCAGGCCAGTATCGATCAGCTTTCA 632 621 132 Antisense
TCGATCAGCTTTCAGCGTTCACTCA 28 603 143 Antisense
AAAGATTTGCGACCGGATACCCAGT 295 123 167 Antisense
CGGATACCCAGTCGTTCAATCAAAC 442 243 180 Antisense
GAAGCTTCCGACAAGTTTATCGCTG 186 341 208 Antisense
ATCGCTGATTACTCGGCTGATGTTC 191 37 226 Antisense
CGAGAAGGATCAGACTCTTTATCAT 253 251 273 Antisense
Sequence Source Affymetrix Proprietary Database