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[178618_at]

Description T05A6.4 /REP_DB=WormBase Gene ID /WP=CE03631 /TR=Q22200 /GB=CAA90668.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 16      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 22
(-3)
A 		24.3
(-1.9)
A 		33.7
(2.6)
A 		34.6
(3)
A 		13
B 4.2
(-3)
A 		16.7
(-0.2)
A 		22
(1)
A 		30.6
(3)
A 		26
C 5.4
(-3)
A 		14.4
(-1.8)
A 		17.9
(-1.4)
A 		51.7
(3)
A 		46
avr 10.5
(-3) 		18.5
(-1.3) 		24.5
(-0.1) 		39
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 2.7
(-3)
A 		21.7
(-0.5)
A 		18.9
(-0.9)
A 		4.3
(-2.8)
A 		6.8
(-2.5)
A 		48.8
(3)
A 		46
B 22.5
(0)
A 		29.3
(3)
A 		21.7
(-0.3)
A 		23.9
(0.7)
A 		16.5
(-2.6)
A 		15.5
(-3)
A 		14
C 28.7
(1.3)
A 		30.7
(1.6)
A 		40.1
(3)
A 		14.4
(-0.9)
A 		3.3
(-2.6)
A 		1
(-3)
A 		39
avr 18
(-0) 		27.2
(3) 		26.9
(2.9) 		14.2
(-1.3) 		8.9
(-3) 		21.8
(1.2) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 8
(1.7)
A 		5.3
(-2.7)
A 		8.8
(3)
A 		5.1
(-3)
A 		4
B 1.3
(-3)
A 		4.1
(0.2)
A 		5.1
(1.4)
A 		6.5
(3)
A 		5
C 1.8
(-3)
A 		4.1
(-1)
A 		6.2
(0.8)
A 		8.7
(3)
A 		7
avr 3.7
(-3) 		4.5
(-1.5) 		6.7
(2.8) 		6.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.5
(-3)
A 		7.7
(0.8)
A 		4.1
(-1.1)
A 		1.1
(-2.7)
A 		2.1
(-2.2)
A 		11.9
(3)
A 		11
B 7.8
(0.3)
A 		9.8
(3)
A 		5.3
(-3)
A 		6.3
(-1.7)
A 		6.7
(-1.1)
A 		5.8
(-2.3)
A 		5
C 10.6
(3)
A 		9.4
(2.3)
A 		10.2
(2.8)
A 		2.9
(-1.5)
A 		1.1
(-2.5)
A 		0.3
(-3)
A 		10
avr 6.3
(0.2) 		9
(3) 		6.5
(0.4) 		3.4
(-2.9) 		3.3
(-3) 		6
(-0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4991
Sequence Type Exemplar sequence
Representative Public ID T05A6.4 NCBI
Target Description T05A6.4 /REP_DB=WormBase Gene ID /WP=CE03631 /TR=Q22200 /GB=CAA90668.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063242 NCBI Caenorhabditis elegans T05A6.4 (T05A6.4) mRNA, complete cds. 11/11 None
GENEFINDER00000031186 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7819283:7822481:-1 10/11 None
T05A6.4 ENSEMBL cdna:known chromosome:CEL140:II:7820227:7822476:-1 gene:T05A6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031184 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7820223-7822473(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A6.4
Entrez Gene 188079 Entrez gene
SwissProt Q22200 EMBL-EBI
WormBase CE03631 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4714 transmembrane receptor protein tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5006 epidermal growth factor receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90668 Hypothetical protein T05A6.4 [Caenorhabditis elegans] ref|NP_495643.1| T05A6.4 [Caenorhabditis elegans] 0.0
blast CAA19491 Hypothetical protein Y37A1B.8 [Caenorhabditis elegans] ref|NP_502688.1| Y37A1B.8 [Caenorhabditis elegans] 1.0E-167
blast CAA19491 Hypothetical protein Y37A1B.8 [Caenorhabditis elegans] ref|NP_502688.1| Y37A1B.8 [Caenorhabditis elegans] 1.0E-165
blast AAF39998 Hypothetical protein ZK355.1 [Caenorhabditis elegans] ref|NP_494403.1| ZK355.1 [Caenorhabditis elegans] 2.0E-90
blast AAF39998 Hypothetical protein ZK355.1 [Caenorhabditis elegans] ref|NP_494403.1| ZK355.1 [Caenorhabditis elegans] 2.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.8E-33
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.2E-33
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.8E-33
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 7.2E-33
Sequence
Target Sequence 
>C. ELEGANS:178618_AT
aaggaaatgtcttcctcccaatggcttccggttattatcaatttagaaaatttacaccca
gatttctgtctaacacattcggaggttatgtggtttcttcttaagaaaatatcgttttcg
aatattcactctaaactgtgccaaactccttatattccaaaaggattagataccttttgt
aattcatcaagacttgaagattcacaaaatcattgtaccattattaatggtagtcttata
atagaaaatggtgatgaacaatatgttagtaagctatccaatttggaatatttatttggt
tcattgacaattcaaaacacaacattgaagaatcttgattttctaagaagattgaaatac
attgcattgtttgaagatgaatatgttattcaaattgtatcaaacatggatctggaaaaa
gccaatattcctcgattatcgaacataatatcaaaatcaaatcgtactgtggttgtacac
aataatccattactactcaagccaaaacgttttccatttcaagttacatatgctacgaac
gttgtatttataggagattattatggtccgtttttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAAATGTCTTCCTCCCAATGGC 236 161 868 Antisense
TCCCAATGGCTTCCGGTTATTATCA 179 599 883 Antisense
AAAATTTACACCCAGATTTCTGTCT 479 133 914 Antisense
GATTTCTGTCTAACACATTCGGAGG 702 427 928 Antisense
TCGGAGGTTATGTGGTTTCTTCTTA 146 599 946 Antisense
GAATATTCACTCTAAACTGTGCCAA 151 327 987 Antisense
ACTGTGCCAAACTCCTTATATTCCA 181 97 1002 Antisense
AAAGCCAATATTCCTCGATTATCGA 502 125 1285 Antisense
AATAATCCATTACTACTCAAGCCAA 598 171 1348 Antisense
ACGTTTTCCATTTCAAGTTACATAT 132 93 1374 Antisense
GAGATTATTATGGTCCGTTTTTGGA 82 397 1421 Antisense
Sequence Source Affymetrix Proprietary Database