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[178617_at]

Description W06G6.2 /REP_DB=WormBase Gene ID /WP=CE20152 /TR=Q9U339 /GB=CAB63326.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 3.9
(-3)
A 		5.9
(-2.4)
A 		10.7
(-1.1)
A 		25.7
(3)
A 		22
B 5.1
(-3)
A 		7.8
(1.4)
A 		6.3
(-1.1)
A 		8.8
(3)
A 		4
C 3.1
(-2.4)
A 		8.3
(1.3)
A 		2.2
(-3)
A 		10.8
(3)
A 		9
avr 4
(-3) 		7.3
(-1.2) 		6.4
(-1.7) 		15.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6
(-1.9)
A 		4.1
(-3)
A 		7.7
(-1)
A 		9.8
(0.2)
A 		14.7
(3)
A 		4.6
(-2.7)
A 		11
B 3.6
(-2.4)
A 		4.4
(-1.7)
A 		10.4
(3)
A 		7.6
(0.8)
A 		5.1
(-1.2)
A 		2.8
(-3)
A 		8
C 3.8
(-2.8)
A 		9.3
(2.1)
A 		6.7
(-0.2)
A 		4.3
(-2.4)
A 		10.3
(3)
A 		3.6
(-3)
A 		7
avr 4.5
(-2.2) 		5.9
(-0.9) 		8.3
(1.4) 		7.2
(0.3) 		10
(3) 		3.7
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.4
(-2.8)
A 		1.3
(-3)
A 		2.8
(0.6)
A 		3.8
(3)
A 		3
B 1.6
(-1.5)
A 		1.9
(3)
A 		1.5
(-3)
A 		1.9
(3)
A 		0
C 1
(-2.3)
A 		2.4
(3)
A 		0.8
(-3)
A 		1.8
(0.8)
A 		2
avr 1.3
(-3) 		1.9
(-0) 		1.7
(-1) 		2.5
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.5
(-2.3)
A 		1.7
(-1.9)
A 		2.5
(-0.5)
A 		4.4
(3)
A 		1.1
(-3)
A 		3
B 1.3
(-1.8)
A 		1.5
(-1)
A 		2.5
(3)
A 		2
(1)
A 		2.1
(1.4)
A 		1
(-3)
A 		2
C 1.4
(-1.8)
A 		2.8
(1.8)
A 		1.7
(-1)
A 		0.9
(-3)
A 		3.3
(3)
A 		1.2
(-2.3)
A 		2
avr 1.3
(-2.5) 		1.9
(-0.8) 		2
(-0.5) 		1.8
(-1.1) 		3.3
(3) 		1.1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14668
Sequence Type Exemplar sequence
Representative Public ID W06G6.2 NCBI
Target Description W06G6.2 /REP_DB=WormBase Gene ID /WP=CE20152 /TR=Q9U339 /GB=CAB63326.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074805 NCBI Caenorhabditis elegans W06G6.2 (W06G6.2) mRNA, complete cds. 11/11 None
SNAP00000000224 ENSEMBL cdna:SNAP chromosome:CEL140:V:16631696:16632230:1 11/11 None
GENEFINDER00000000242 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16631873:16632230:1 11/11 None
W06G6.2 ENSEMBL cdna:known chromosome:CEL140:V:16631873:16632226:1 gene:W06G6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16631872-16632226(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06G6.2
Entrez Gene 189255 Entrez gene
SwissProt Q9U339 EMBL-EBI
WormBase CE20152 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63326 Hypothetical protein W06G6.2 [Caenorhabditis elegans] ref|NP_507206.1| W06G6.2 [Caenorhabditis elegans] 5.0E-43
blast CAB63326 Hypothetical protein W06G6.2 [Caenorhabditis elegans] ref|NP_507206.1| W06G6.2 [Caenorhabditis elegans] 2.0E-32
blast CAB63326 Hypothetical protein W06G6.2 [Caenorhabditis elegans] ref|NP_507206.1| W06G6.2 [Caenorhabditis elegans] 3.0E-32
Sequence
Target Sequence 
>C. ELEGANS:178617_AT
gctgatgcctcgctgaatgcagaatctcaataccaggatgacaccgaccacgagtccaga
aaactgtcatcaaaccctgaaccttctggaaatcaagacgcttcaccacaagagtcccct
gcactgaattccatgaacactgatggatttggagctggcgttgaaactccgacggatcga
caacatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGATGCCTCGCTGAATGCAGAAT 369 295 16 Antisense
AATGCAGAATCTCAATACCAGGATG 350 165 31 Antisense
CAATACCAGGATGACACCGACCACG 677 179 43 Antisense
CACCGACCACGAGTCCAGAAAACTG 515 199 57 Antisense
AAACTGTCATCAAACCCTGAACCTT 333 127 76 Antisense
AACCCTGAACCTTCTGGAAATCAAG 249 147 88 Antisense
GGAAATCAAGACGCTTCACCACAAG 316 527 103 Antisense
TCCCCTGCACTGAATTCCATGAACA 479 597 130 Antisense
TGGATTTGGAGCTGGCGTTGAAACT 13 551 159 Antisense
AGCTGGCGTTGAAACTCCGACGGAT 366 81 168 Antisense
AACTCCGACGGATCGACAACATTTT 85 105 180 Antisense
Sequence Source Affymetrix Proprietary Database