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[178614_s_at]

Description F36F2.2 /REP_DB=WormBase Gene ID /WP=CE15976 /TR=O62233 /GB=CAB04324.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 98      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19082
1 2 3 4 range
A 522.5
(-2.9)
P 		356.8
(-3)
P 		248.2
(-3)
P 		18899.8
(3)
P 		18652
B 516.2
(-2.9)
P 		365.7
(-2.9)
P 		206.9
(-3)
P 		15554.6
(3)
P 		15348
C 534.1
(-2.9)
P 		330.9
(-3)
P 		249.2
(-3)
P 		19288.5
(3)
P 		19039
avr 524.3
(-2.9) 		351.1
(-3) 		234.8
(-3) 		17914.3
(3) 		17680

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1747
1 2 3 4 5 6 range
A 435.5
(-2.7)
P 		391.9
(-3)
P 		825.4
(-0.4)
P 		993.9
(0.6)
P 		971.9
(0.5)
P 		1386.8
(3)
P 		995
B 498.9
(-3)
P 		520.3
(-2.9)
P 		611.9
(-2.6)
P 		945.4
(-1.3)
P 		1246.8
(-0.2)
P 		2073.9
(3)
P 		1575
C 327
(-3)
P 		556.2
(-2.2)
P 		447.1
(-2.6)
P 		1023
(-0.6)
P 		772.4
(-1.4)
P 		2043.7
(3)
P 		1717
avr 420.5
(-3) 		489.5
(-2.7) 		628.1
(-2.1) 		987.4
(-0.6) 		997
(-0.6) 		1834.8
(3) 		1414
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3267
1 2 3 4 range
A 190.2
(-2.7)
P 		77.4
(-3)
P 		64.9
(-3)
P 		2766.6
(3)
P 		2702
B 164.6
(-2.8)
P 		90.3
(-2.9)
P 		47.9
(-3)
P 		3314.7
(3)
P 		3267
C 176.8
(-2.8)
P 		95.1
(-3)
P 		86.9
(-3)
P 		3252.3
(3)
P 		3165
avr 177.2
(-2.8) 		87.6
(-3) 		66.6
(-3) 		3111.2
(3) 		3045

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 693
1 2 3 4 5 6 range
A 80.3
(-3)
P 		139.4
(-1.6)
P 		179.8
(-0.7)
P 		252.1
(1)
P 		293.3
(2)
P 		337.6
(3)
P 		257
B 173.6
(-2.8)
P 		173.2
(-2.8)
P 		148.6
(-3)
P 		250.4
(-2)
P 		506.6
(0.4)
P 		773.4
(3)
P 		625
C 121.2
(-2.9)
P 		169.7
(-2.4)
P 		113.8
(-3)
P 		205.7
(-2)
P 		249.9
(-1.6)
P 		684.1
(3)
P 		570
avr 125
(-3) 		160.8
(-2.5) 		147.4
(-2.7) 		236.1
(-1.6) 		349.9
(-0.1) 		598.4
(3) 		473
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178614_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1282
Sequence Type Exemplar sequence
Representative Public ID F36F2.2 NCBI
Target Description F36F2.2 /REP_DB=WormBase Gene ID /WP=CE15976 /TR=O62233 /GB=CAB04324.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060024 NCBI Caenorhabditis elegans F36F2.2 (F36F2.2) mRNA, complete cds. 11/11 A 
SNAP00000021377 ENSEMBL cdna:SNAP chromosome:CEL140:I:9024921:9026103:1 11/11 None
GENEFINDER00000021386 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9024921:9026103:1 11/11 None
F36F2.2 ENSEMBL cdna:known chromosome:CEL140:I:9024921:9026418:1 gene:F36F2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9024851-9026034(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36F2.2
Entrez Gene 172721 Entrez gene
SwissProt O62233 EMBL-EBI
WormBase CE15976 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04324 Hypothetical protein F36F2.2 [Caenorhabditis elegans] ref|NP_492425.1| F36F2.2 [Caenorhabditis elegans] 1.0E-159
blast CAE67019 Hypothetical protein CBG12420 [Caenorhabditis briggsae] 8.0E-80
Sequence
Target Sequence 
>C. ELEGANS:178614_S_AT
tcatgaatgatgtcgatggtccgaagaaaaaattacttgttcggaggaaaaaaaagtcca
agacgcctgattcaccacctcaatatcgtgattacacggagacgtccatttacatgtata
ttgaaatggataagcaaaatgttggagaatttgtgtgggatcagcaatgcacacgaattg
atgctcttgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGAATGATGTCGATGGTCCGAA 113 621 626 Antisense
GAATGATGTCGATGGTCCGAAGAAA 12 333 630 Antisense
AAAAGTCCAAGACGCCTGATTCACC 263 133 677 Antisense
CCTGATTCACCACCTCAATATCGTG 578 265 691 Antisense
ACCACCTCAATATCGTGATTACACG 452 85 699 Antisense
GTGATTACACGGAGACGTCCATTTA 188 485 713 Antisense
TACACGGAGACGTCCATTTACATGT 451 641 718 Antisense
GAGACGTCCATTTACATGTATATTG 674 393 724 Antisense
GTTGGAGAATTTGTGTGGGATCAGC 239 437 766 Antisense
GTGGGATCAGCAATGCACACGAATT 350 489 780 Antisense
TGCACACGAATTGATGCTCTTGTTG 523 575 793 Antisense
Sequence Source Affymetrix Proprietary Database