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[178613_at]

Description F36F2.2 /REP_DB=WormBase Gene ID /WP=CE15976 /TR=O62233 /GB=CAB04324.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 95      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11511
1 2 3 4 range
A 327.7
(-2.9)
P 		183.7
(-3)
P 		112
(-3)
P 		11541.6
(3)
P 		11430
B 379.2
(-2.9)
P 		253.6
(-2.9)
P 		123.5
(-3)
P 		10750.5
(3)
P 		10627
C 442.8
(-2.9)
P 		200.8
(-3)
P 		199.6
(-3)
P 		11622.7
(3)
P 		11423
avr 383.2
(-2.9) 		212.7
(-3) 		145
(-3) 		11304.9
(3) 		11160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1263
1 2 3 4 5 6 range
A 227.7
(-3)
P 		321.3
(-2.3)
P 		533.2
(-0.6)
P 		722.8
(0.9)
P 		749.6
(1.1)
P 		996.4
(3)
P 		769
B 321.9
(-3)
P 		347.6
(-2.9)
P 		661.2
(-1.2)
P 		683.2
(-1)
P 		890.2
(0.1)
P 		1429.2
(3)
P 		1107
C 299.4
(-3)
P 		394
(-2.5)
P 		417.5
(-2.4)
P 		981.6
(0.4)
P 		761.3
(-0.7)
P 		1490.5
(3)
P 		1191
avr 283
(-3) 		354.3
(-2.6) 		537.3
(-1.5) 		795.9
(0) 		800.4
(0) 		1305.4
(3) 		1022
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2262
1 2 3 4 range
A 119.3
(-2.7)
P 		39.9
(-3)
P 		29.3
(-3)
P 		1689.5
(3)
P 		1660
B 120.9
(-2.8)
P 		62.6
(-2.9)
P 		28.6
(-3)
P 		2290.9
(3)
P 		2262
C 146.6
(-2.7)
P 		57.7
(-3)
P 		69.6
(-3)
P 		1959.8
(3)
P 		1902
avr 128.9
(-2.7) 		53.4
(-3) 		42.5
(-3) 		1980.1
(3) 		1938

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 42
(-3)
P 		114.3
(-0.8)
P 		116.1
(-0.8)
P 		183.3
(1.2)
P 		226.2
(2.5)
P 		242.6
(3)
P 		201
B 112
(-3)
P 		115.7
(-2.9)
P 		160.6
(-2.3)
P 		180.9
(-2)
P 		361.7
(0.6)
P 		532.9
(3)
P 		421
C 111
(-2.9)
P 		120.2
(-2.8)
P 		106.2
(-3)
P 		197.4
(-1.6)
P 		246.3
(-0.9)
P 		499
(3)
P 		393
avr 88.3
(-3) 		116.7
(-2.5) 		127.6
(-2.3) 		187.2
(-1.2) 		278.1
(0.4) 		424.8
(3) 		337
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1282
Sequence Type Exemplar sequence
Representative Public ID F36F2.2 NCBI
Target Description F36F2.2 /REP_DB=WormBase Gene ID /WP=CE15976 /TR=O62233 /GB=CAB04324.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060024(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060024 NCBI Caenorhabditis elegans F36F2.2 (F36F2.2) mRNA, complete cds. 11/11 A 
SNAP00000021377 ENSEMBL cdna:SNAP chromosome:CEL140:I:9024921:9026103:1 11/11 None
GENEFINDER00000021386 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9024921:9026103:1 11/11 None
F36F2.2 ENSEMBL cdna:known chromosome:CEL140:I:9024921:9026418:1 gene:F36F2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9024851-9026034(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36F2.2
Entrez Gene 172721 Entrez gene
SwissProt O62233 EMBL-EBI
WormBase CE15976 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04324 Hypothetical protein F36F2.2 [Caenorhabditis elegans] ref|NP_492425.1| F36F2.2 [Caenorhabditis elegans] 1.0E-159
blast CAE67019 Hypothetical protein CBG12420 [Caenorhabditis briggsae] 8.0E-80
Sequence
Target Sequence 
>C. ELEGANS:178613_AT
tcgacaaaccacttttacactctgactcagctacattgatatgtgatgaagtggctacaa
gcaggtcaccatttgaaatatcaactaatgaagtggaaaatgtggatattcagtcggaac
cgagggatcgacacgtgtcaattacttctatggaaagtgtggcaggattaggagaagcag
atgatcaagatgatgtcacgatcttgaagggattggaagaagttcatgaaatagaagttg
ataaaacagtaatagaagaatctattccaaatcaaccaaaaggacaaagatttgatctac
tttcaaatggagatgtgactattccagcaatgatcatgaatgatgtcgatggtccgaaga
aaaaattacttgttcggaggaaaaaaaagtccaagacgcctgattcaccacctcaatatc
gtgattacacggagacgtccatttacatgtatattgaaatggataagcaaaatgttggag
aatttgtgtgggatcagcaatgcacacgaattgatgctcttgttgctccaattgttgaat
tggacagaatgacgactccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACAAACCACTTTTACACTCTGA 56 601 293 Antisense
TACACTCTGACTCAGCTACATTGAT 297 643 308 Antisense
GAAGTGGCTACAAGCAGGTCACCAT 435 335 340 Antisense
GCAGGTCACCATTTGAAATATCAAC 531 311 353 Antisense
ATGTGGATATTCAGTCGGAACCGAG 287 49 392 Antisense
CGGAACCGAGGGATCGACACGTGTC 652 237 407 Antisense
GACACGTGTCAATTACTTCTATGGA 665 367 422 Antisense
GATGATGTCACGATCTTGAAGGGAT 323 411 481 Antisense
AAGAATCTATTCCAAATCAACCAAA 83 153 548 Antisense
GAGATGTGACTATTCCAGCAATGAT 619 395 602 Antisense
GAATTGGACAGAATGACGACTCCAG 477 323 829 Antisense
Sequence Source Affymetrix Proprietary Database