[Home] | [Total List]

[178612_at]

Description T01G1.2 /REP_DB=WormBase Gene ID /WP=CE12970 /TR=O45723 /GB=CAB07272.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 41      6grp_total > 29      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1306
1 2 3 4 range
A 676.5
(-1.3)
P 		433
(-2.6)
P 		348.9
(-3)
P 		1533
(3)
P 		1184
B 716.6
(-1.4)
P 		444.2
(-2.7)
P 		375.2
(-3)
P 		1649.7
(3)
P 		1275
C 602.1
(-1.5)
P 		465.4
(-2.3)
P 		344.1
(-3)
P 		1401.2
(3)
P 		1057
avr 665.1
(-1.4) 		447.5
(-2.5) 		356.1
(-3) 		1528
(3) 		1172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 508
1 2 3 4 5 6 range
A 784.5
(2.6)
P 		779.4
(2.5)
P 		510.9
(-3)
P 		610.2
(-1)
P 		801.9
(3)
P 		572.7
(-1.7)
P 		291
B 944
(3)
P 		701.6
(-0.7)
P 		555.4
(-3)
P 		649.7
(-1.5)
P 		889.3
(2.2)
P 		629.2
(-1.9)
P 		389
C 1018.9
(3)
P 		669
(-1.7)
P 		570.2
(-3)
P 		653.6
(-1.9)
P 		587.2
(-2.8)
P 		568.6
(-3)
P 		450
avr 915.8
(3) 		716.7
(-0.2) 		545.5
(-3) 		637.8
(-1.5) 		759.5
(0.5) 		590.2
(-2.3) 		370
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 246.3
(3)
P 		94
(-2.9)
P 		91.2
(-3)
P 		224.4
(2.2)
P 		155
B 228.5
(0.2)
P 		109.7
(-2.5)
P 		86.9
(-3)
P 		351.6
(3)
P 		265
C 199.3
(1.1)
P 		133.8
(-2.3)
P 		119.9
(-3)
P 		236.3
(3)
P 		116
avr 224.7
(1.4) 		112.5
(-2.5) 		99.3
(-3) 		270.8
(3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 144.6
(-1.8)
P 		277.2
(3)
P 		111.3
(-3)
P 		154.8
(-1.4)
P 		242
(1.7)
P 		139.4
(-2)
P 		166
B 328.5
(2.1)
P 		233.5
(-0.4)
P 		134.9
(-3)
P 		172.1
(-2)
P 		361.3
(3)
P 		234.6
(-0.4)
P 		226
C 377.7
(3)
P 		204.1
(-1.2)
P 		145.1
(-2.7)
P 		131.4
(-3)
P 		190
(-1.6)
P 		190.3
(-1.6)
P 		246
avr 283.6
(3) 		238.3
(1.2) 		130.4
(-3) 		152.8
(-2.1) 		264.4
(2.2) 		188.1
(-0.7) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8394
Sequence Type Exemplar sequence
Representative Public ID T01G1.2 NCBI
Target Description T01G1.2 /REP_DB=WormBase Gene ID /WP=CE12970 /TR=O45723 /GB=CAB07272.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069742 NCBI Caenorhabditis elegans T01G1.2 (T01G1.2) mRNA, complete cds. 11/11 None
SNAP00000007359 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11354407:11355033:1 11/11 None
GENEFINDER00000007367 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11354407:11355033:1 11/11 None
T01G1.2 ENSEMBL cdna:known chromosome:CEL140:IV:11354407:11355033:1 gene:T01G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11354412-11355039(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01G1.2
Entrez Gene 178058 Entrez gene
SwissProt O45723 EMBL-EBI
WormBase CE12970 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07272 Hypothetical protein T01G1.2 [Caenorhabditis elegans] ref|NP_502143.1| T01G1.2 [Caenorhabditis elegans] 2.0E-83
blast CAE62059 Hypothetical protein CBG06077 [Caenorhabditis briggsae] 8.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502143.1 2 50-72,82-99
T01G1.2 2 50-72,82-99
SNAP00000007359 2 50-72,82-99
GENEFINDER00000007367 2 50-72,82-99
Sequence
Target Sequence 
>C. ELEGANS:178612_AT
gagaagcgtaccagtgttcagatgaagacaagtttctcccaagaagtatataaaactccg
atcaagcaaattcttactgcaccatcacaatcccactcacgaatcacaccaggtggacag
ctcttcttatgtgtgatgggactattgataagtgttgcgatcagcatctggttagccgca
tttagtcgtgaaaatggatggcgtcgagctgtcttcgcatcggccgctggtatctgtgcg
attctcttcatgcttctcactatcatgacctacagaagagcgaaaaacccacaagaaccg
gagccacttccagatctttcacaacgtcgatctacaatcggagcacgagttagtaaacga
tcaattgcggcgggaatgagcgcagacgactgtccaacgcaggtcttagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGCGTACCAGTGTTCAGATGA 97 393 46 Antisense
GCAAATTCTTACTGCACCATCACAA 685 317 111 Antisense
CACTCACGAATCACACCAGGTGGAC 533 197 139 Antisense
CCAGGTGGACAGCTCTTCTTATGTG 112 271 154 Antisense
GATCAGCATCTGGTTAGCCGCATTT 192 421 204 Antisense
AAATGGATGGCGTCGAGCTGTCTTC 416 121 237 Antisense
TATCTGTGCGATTCTCTTCATGCTT 429 659 276 Antisense
TGCTTCTCACTATCATGACCTACAG 547 579 296 Antisense
ACTTCCAGATCTTTCACAACGTCGA 41 103 351 Antisense
GGGAATGAGCGCAGACGACTGTCCA 430 493 417 Antisense
ACGACTGTCCAACGCAGGTCTTAGT 433 93 431 Antisense
Sequence Source Affymetrix Proprietary Database