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[178610_at]

Description C49A1.9 /REP_DB=WormBase Gene ID /WP=CE28210 /TR=O17678 /GB=CAB05706.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 19      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 29.1
(-3)
A 		69.4
(1.2)
A 		61.9
(0.4)
A 		87.3
(3)
A 		58
B 78.5
(3)
A 		37.6
(-0.3)
A 		3.1
(-3)
A 		38.1
(-0.2)
A 		75
C 3.3
(-3)
A 		32.5
(-1.9)
A 		7.6
(-2.8)
A 		168
(3)
A 		165
avr 37
(-2) 		46.5
(-1.2) 		24.2
(-3) 		97.8
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 20
(-0.9)
A 		10.2
(-2.2)
A 		30.1
(0.3)
A 		3.9
(-2.9)
A 		51.3
(3)
A 		3.5
(-3)
A 		48
B 9.2
(-0.9)
A 		7.7
(-1.8)
A 		11.5
(0.5)
A 		15.7
(3)
A 		9.4
(-0.7)
A 		5.6
(-3)
A 		10
C 16.1
(-2.3)
A 		72.8
(3)
A 		8.7
(-3)
A 		14.7
(-2.4)
A 		47.9
(0.7)
A 		42.7
(0.2)
A 		64
avr 15.1
(-2.1) 		30.2
(1.5) 		16.8
(-1.7) 		11.4
(-3) 		36.2
(3) 		17.3
(-1.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 10.6
(-3)
A 		15.1
(1.8)
A 		16.2
(3)
A 		12.8
(-0.6)
A 		6
B 25
(3)
A 		9.3
(-0.9)
A 		0.7
(-3)
A 		8.1
(-1.2)
A 		24
C 1.1
(-3)
A 		9.3
(-1.2)
A 		2.6
(-2.7)
A 		28.3
(3)
A 		27
avr 12.2
(0.5) 		11.2
(-0.2) 		6.5
(-3) 		16.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.7
(-1.8)
A 		3.6
(-1.9)
A 		6.6
(-0.6)
A 		1
(-2.9)
A 		15.5
(3)
A 		0.8
(-3)
A 		15
B 3.2
(0.1)
A 		2.6
(-1.6)
A 		2.8
(-1)
A 		4.2
(3)
A 		3.8
(1.9)
A 		2.1
(-3)
A 		2
C 6
(-1.9)
A 		22.2
(3)
A 		2.2
(-3)
A 		3
(-2.8)
A 		15.5
(1)
A 		14.3
(0.6)
A 		20
avr 4.3
(-1.9) 		9.5
(1.6) 		3.9
(-2.2) 		2.7
(-3) 		11.6
(3) 		5.7
(-1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178610_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.466
Sequence Type Exemplar sequence
Representative Public ID C49A1.9 NCBI
Target Description C49A1.9 /REP_DB=WormBase Gene ID /WP=CE28210 /TR=O17678 /GB=CAB05706.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061083
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C49A1.9 ENSEMBL cdna:known chromosome:CEL140:I:14239788:14244066:-1 gene:C49A1.9 None
GENEFINDER00000008669 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14241045:14244066:-1 None
NM_061083 NCBI Caenorhabditis elegans C49A1.9 (C49A1.9) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14239322-14243997(-) 85.6 100.0
Public Domain and Genome References
Gene Title
Ensembl C49A1.9
Entrez Gene 183590 Entrez gene
SwissProt O17678 EMBL-EBI
WormBase CE28210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05706 Hypothetical protein C49A1.9 [Caenorhabditis elegans] ref|NP_493484.1| C49A1.9 [Caenorhabditis elegans] 0.0
blast CAB05706 Hypothetical protein C49A1.9 [Caenorhabditis elegans] ref|NP_493484.1| C49A1.9 [Caenorhabditis elegans] 1.0E-178
blast CAB81990 Hypothetical protein Y71A12B.5 [Caenorhabditis elegans] ref|NP_493430.1| Y71A12B.5 [Caenorhabditis elegans] 1.0E-39
blast CAB81990 Hypothetical protein Y71A12B.5 [Caenorhabditis elegans] ref|NP_493430.1| Y71A12B.5 [Caenorhabditis elegans] 9.0E-38
blast CAC14421 Hypothetical protein Y71A12B.6 [Caenorhabditis elegans] ref|NP_493431.1| Y71A12B.6 [Caenorhabditis elegans] 7.0E-34
blast CAC14421 Hypothetical protein Y71A12B.6 [Caenorhabditis elegans] ref|NP_493431.1| Y71A12B.6 [Caenorhabditis elegans] 4.0E-32
Sequence
Target Sequence 
>C. ELEGANS:178610_AT
actgaaatatgatcgcttcgccgctttcgcacgctccccatctccctatactctcagaaa
tgagaggaaaataagggaaggggttgttcaagctattggagaccaagcttcgaagggata
tatatatatccccaaaatgttgaaaatcagggcttgtatagtcaaaccaataaataaaaa
aatttatgacacagtgcggactcgaaccccggttgtcagattggaagccctccaaaatcc
cactgagccattcgagcaaattttcagaaaatcgaggtttgagctgatttttaaaaattt
tgagcattttttgggactgttcagcatatgtctcatgtgtgctaggtgcaatgagctatt
aaaatttaagcttgatagtttattttcaataaaaaaatccgaaaataatgcgattttcca
ccaaaaggcggagctccgagcagacagccgactggctcagacatacggtagctcaggggt
gagagctccgagagctcagagagccggcagagaaaacgagagcacacacacacacacaaa
tacatcagagtcagtctctccctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGAAATATGATCGCTTCGCCGCT 432 97 1350 Antisense
CCATCTCCCTATACTCTCAGAAATG 545 271 1387 Antisense
TATGACACAGTGCGGACTCGAACCC 465 655 1534 Antisense
GAACCCCGGTTGTCAGATTGGAAGC 347 347 1553 Antisense
ATCCCACTGAGCCATTCGAGCAAAT 485 37 1586 Antisense
GAGCATTTTTTGGGACTGTTCAGCA 253 389 1651 Antisense
ATATGTCTCATGTGTGCTAGGTGCA 492 19 1675 Antisense
TCCGAGCAGACAGCCGACTGGCTCA 623 595 1784 Antisense
GACTGGCTCAGACATACGGTAGCTC 140 377 1799 Antisense
AGCTCCGAGAGCTCAGAGAGCCGGC 73 81 1833 Antisense
ATACATCAGAGTCAGTCTCTCCCTG 119 25 1889 Antisense
Sequence Source Affymetrix Proprietary Database