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[178609_at]

Description ZK337.5 /REP_DB=WormBase Gene ID /WP=CE24721 /TR=Q9TW36 /GB=CAB51468.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 11      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 80      6grp_total > 23      4grp_total > 37      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 259.8
(1)
P 		308.1
(3)
P 		162.8
(-3)
P 		235.4
(-0)
P 		145
B 360.1
(3)
P 		232.5
(-1.3)
P 		183.8
(-3)
P 		213.5
(-2)
P 		176
C 283
(3)
P 		265
(2)
P 		170.5
(-3)
P 		194.2
(-1.7)
P 		113
avr 301
(3) 		268.5
(1.5) 		172.4
(-3) 		214.4
(-1) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 197.4
(2.5)
P 		201.4
(3)
P 		150.8
(-3)
P 		161.9
(-1.7)
P 		152.7
(-2.8)
P 		151.6
(-2.9)
P 		51
B 209.5
(2.8)
P 		164.2
(-0.1)
P 		212.9
(3)
P 		176.5
(0.7)
P 		119.3
(-3)
P 		136.6
(-1.9)
P 		94
C 220.6
(2)
P 		212.7
(1.7)
P 		198.6
(1.1)
P 		242.2
(3)
P 		147
(-1.2)
P 		106.1
(-3)
P 		136
avr 209.2
(3) 		192.8
(1.7) 		187.4
(1.3) 		193.5
(1.8) 		139.7
(-2.4) 		131.4
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 94.6
(3)
P 		66.9
(0.2)
P 		42.6
(-2.2)
P 		34.5
(-3)
P 		60
B 114.8
(3)
P 		57.4
(-1.8)
P 		42.6
(-3)
P 		45.5
(-2.8)
P 		72
C 93.7
(3)
P 		76.2
(1.3)
P 		59.4
(-0.4)
P 		32.7
(-3)
P 		61
avr 101
(3) 		66.8
(-0.2) 		48.2
(-2) 		37.6
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 36.4
(-2.4)
P 		71.6
(3)
P 		32.8
(-3)
P 		41.1
(-1.7)
P 		46.1
(-0.9)
P 		36.9
(-2.4)
P 		39
B 72.9
(3)
P 		54.7
(-1.2)
P 		51.7
(-1.9)
P 		46.7
(-3)
P 		48.5
(-2.6)
P 		50.9
(-2)
P 		26
C 81.8
(3)
P 		64.9
(0.8)
P 		50.6
(-1)
P 		48.7
(-1.3)
P 		47.6
(-1.4)
P 		35.5
(-3)
P 		46
avr 63.7
(3) 		63.7
(3) 		45
(-2) 		45.5
(-1.8) 		47.4
(-1.3) 		41.1
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1323
Sequence Type Exemplar sequence
Representative Public ID ZK337.5 NCBI
Target Description ZK337.5 /REP_DB=WormBase Gene ID /WP=CE24721 /TR=Q9TW36 /GB=CAB51468.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061214(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061214 NCBI Caenorhabditis elegans Mec-3 (Three) Dependent expression family member (mtd-1) (mtd-1) mRNA, complete cds. 11/11 None
ZK337.5 ENSEMBL cdna:known chromosome:CEL140:I:15010002:15013673:1 gene:ZK337.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024740 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:15009932-15013572(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mtd-1
Ensembl ZK337.5
Entrez Gene 191285 Entrez gene
SwissProt Q9TW36 EMBL-EBI
WormBase CE24721 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB51468 Hypothetical protein ZK337.5 [Caenorhabditis elegans] emb|CAB51464.1| Hypothetical protein ZK337.5 [Caenorhabditis elegans] ref|NP_493615.1| Mec-3 (Three) Dependent expression family member (mtd-1) [Caenorhabditis elegans] 1.0E-157
blast CAE72570 Hypothetical protein CBG19757 [Caenorhabditis briggsae] 1.0E-122
Sequence
Target Sequence 
>C. ELEGANS:178609_AT
gcagccaaaatacgcacacggtcagcagtgtaccaattcgatggaggtaccaaatgagga
tattaggcagttcaggccgtgcgacgatcccttctgttattcggttctcaccgctgaaga
cgacggaggaccaactaccgtaacccgtggatgtcattcccgaaaaatggtgatgcatca
tatgtcgaagaatgaggatgacaagtaccaaaacaatacgaaatggcgggaaactaagca
aatcgctgagatgccgagttgtgcagagattcttaaggatcaaccaaaagttaatgggac
cactagtatgtgtgtggatttcacgtatgatcaggaggccgaagatggtgaagaagtaga
tgagccaattaaaatgaagggtcgactgtgctgttgtgctggatccaataaatgcaatga
acatgcaatgtgggctgatgaggggatctcgttaactgaaatgttggaggaaatcgaggc
gaggaaggttccagttgatagttccgccccagttaatatcattcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCCAAAATACGCACACGGTCAG 279 315 288 Antisense
CACGGTCAGCAGTGTACCAATTCGA 335 199 304 Antisense
TATTAGGCAGTTCAGGCCGTGCGAC 281 661 348 Antisense
TCTGTTATTCGGTTCTCACCGCTGA 529 607 380 Antisense
TGAAGACGACGGAGGACCAACTACC 579 571 402 Antisense
TAACCCGTGGATGTCATTCCCGAAA 305 637 428 Antisense
ATCGCTGAGATGCCGAGTTGTGCAG 539 35 529 Antisense
TCGACTGTGCTGTTGTGCTGGATCC 537 599 669 Antisense
GAGGGGATCTCGTTAACTGAAATGT 636 401 727 Antisense
GAAGGTTCCAGTTGATAGTTCCGCC 180 335 771 Antisense
TTCCGCCCCAGTTAATATCATTCTA 212 699 789 Antisense
Sequence Source Affymetrix Proprietary Database