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[178607_s_at]

Description F26A3.1 /REP_DB=WormBase Gene ID /WP=CE20724 /TR=Q93595 /GB=CAB01705.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 66      6grp_total > 50      4grp_total > 03      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8045
1 2 3 4 range
A 1346.7
(-2.5)
P 		955.6
(-2.7)
P 		618.1
(-3)
P 		8659.3
(3)
P 		8041
B 1618.9
(-1.7)
P 		676.2
(-2.9)
P 		614
(-3)
P 		5126.7
(3)
P 		4513
C 1323.3
(-2.4)
P 		812.4
(-2.8)
P 		636.8
(-3)
P 		7008.3
(3)
P 		6372
avr 1429.6
(-2.2) 		814.7
(-2.8) 		623
(-3) 		6931.4
(3) 		6308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1314
1 2 3 4 5 6 range
A 1405.7
(-1)
P 		1301.6
(-1.5)
P 		2285.7
(3)
P 		1882.3
(1.2)
P 		1174.4
(-2.1)
P 		971.9
(-3)
P 		1314
B 1306.2
(-1)
P 		1779.8
(3)
P 		1479
(0.5)
P 		1702.9
(2.4)
P 		1291.5
(-1.1)
P 		1067.5
(-3)
P 		712
C 1132.2
(-2.3)
P 		1722.9
(0.7)
P 		1272
(-1.6)
P 		2191.1
(3)
P 		1194.5
(-2)
P 		991.9
(-3)
P 		1199
avr 1281.4
(-1.2) 		1601.4
(0.9) 		1678.9
(1.4) 		1925.4
(3) 		1220.1
(-1.6) 		1010.4
(-3) 		915
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1125
1 2 3 4 range
A 490.3
(-1.2)
P 		207.4
(-2.8)
P 		161.6
(-3)
P 		1267.5
(3)
P 		1106
B 516.2
(-0.6)
P 		167
(-2.8)
P 		142.3
(-3)
P 		1092.5
(3)
P 		950
C 438
(-1.6)
P 		233.6
(-2.9)
P 		221.9
(-3)
P 		1181.7
(3)
P 		960
avr 481.5
(-1.2) 		202.7
(-2.8) 		175.3
(-3) 		1180.6
(3) 		1005

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 356
1 2 3 4 5 6 range
A 259.1
(-2.5)
P 		462.9
(2.2)
P 		497.8
(3)
P 		477.4
(2.5)
P 		354.4
(-0.3)
P 		236.6
(-3)
P 		261
B 454.5
(-0.5)
P 		592.4
(3)
P 		359.1
(-3)
P 		451
(-0.6)
P 		524.7
(1.3)
P 		398.1
(-2)
P 		233
C 419.7
(-0.1)
P 		525.7
(3)
P 		323.7
(-3)
P 		440.6
(0.5)
P 		386.5
(-1.1)
P 		332
(-2.8)
P 		202
avr 377.8
(-1.4) 		527
(3) 		393.5
(-0.9) 		456.3
(0.9) 		421.9
(-0.1) 		322.2
(-3) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178607_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1596
Sequence Type Exemplar sequence
Representative Public ID F26A3.1 NCBI
Target Description F26A3.1 /REP_DB=WormBase Gene ID /WP=CE20724 /TR=Q93595 /GB=CAB01705.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059728(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059728 NCBI Caenorhabditis elegans F26A3.1 (F26A3.1) mRNA, complete cds. 11/11 None
SNAP00000002466 ENSEMBL cdna:SNAP chromosome:CEL140:I:7648552:7649894:-1 11/11 None
GENEFINDER00000002476 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7648552:7651368:-1 11/11 None
F26A3.1 ENSEMBL cdna:known chromosome:CEL140:I:7648470:7649894:-1 gene:F26A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7648482-7649759(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A3.1
Entrez Gene 172522 Entrez gene
SwissProt Q93595 EMBL-EBI
WormBase CE20724 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1637620_S_AT dm
DROSGENOME1:141298_AT dm
CHICKEN:GGA.6838.1.S1_AT similar to hypothetical protein FLJ21820 gga
CHICKEN:GGA.8355.2.S1_A_AT similar to hypothetical protein FLJ21820 gga
CHICKEN:GGAAFFX.20385.1.S1_AT Similar to hypothetical protein FLJ21820 gga
HG-U133_PLUS_2:222192_S_AT hypothetical protein FLJ21820 hs
HG-U133A_2:222192_S_AT hypothetical protein FLJ21820 hs
HG-U133A:222192_S_AT hypothetical protein FLJ21820 hs
HU35KSUBC:RC_AA464979_AT hypothetical protein FLJ21820 hs
HG-U133A:219008_AT hypothetical protein FLJ21820 hs
HG-U133_PLUS_2:219008_AT hypothetical protein FLJ21820 hs
HG-U133A_2:219008_AT hypothetical protein FLJ21820 hs
U133_X3P:G11345457_3P_AT hypothetical protein FLJ21820 hs
HG-U95B:46579_AT hypothetical protein FLJ21820 hs
HG-U133_PLUS_2:232747_AT Hypothetical protein FLJ21820 hs
HG-U133B:232747_AT Hypothetical protein FLJ21820 hs
HG-U133_PLUS_2:222193_AT Hypothetical protein FLJ21820 hs
HG-U133A_2:222193_AT Hypothetical protein FLJ21820 hs
HG-U133A:222193_AT Hypothetical protein FLJ21820 hs
HU35KSUBD:RC_H65694_AT Hypothetical protein FLJ21820 hs
U133_X3P:HS.63300.1.S1_3P_AT Hypothetical protein FLJ21820 hs
U133_X3P:HS.274980.0.S1_3P_X_AT Hypothetical protein FLJ21820 hs
U133_X3P:232747_3P_AT Hypothetical protein FLJ21820 hs
HG-U95C:55953_AT Hypothetical protein FLJ21820 hs
HG-U95E:89448_AT Hypothetical protein FLJ21820 hs
HG-U95D:67395_AT Hypothetical protein FLJ21820 hs
HG-U95D:86950_AT Hypothetical protein FLJ21820 hs
MG-U74AV2:94382_AT RIKEN cDNA 1110057K04 gene mm
MOUSE430_2:1437981_X_AT RIKEN cDNA 1110057K04 gene mm
MOE430A:1437981_X_AT RIKEN cDNA 1110057K04 gene mm
MOUSE430A_2:1437981_X_AT RIKEN cDNA 1110057K04 gene mm
MU11KSUBA:C78933_RC_AT RIKEN cDNA 1110057K04 gene mm
MU11KSUBA:C78933_RC_G_AT RIKEN cDNA 1110057K04 gene mm
MG-U74CV2:170695_AT RIKEN cDNA 1110057K04 gene mm
MOE430A:1428085_AT RIKEN cDNA 1110057K04 gene mm
MOUSE430A_2:1428085_AT RIKEN cDNA 1110057K04 gene mm
MOUSE430_2:1428085_AT RIKEN cDNA 1110057K04 gene mm
MOE430A:1436519_A_AT RIKEN cDNA 1110057K04 gene mm
MOUSE430A_2:1436519_A_AT RIKEN cDNA 1110057K04 gene mm
MOUSE430_2:1436519_A_AT RIKEN cDNA 1110057K04 gene mm
MOE430B:1440295_AT RIKEN cDNA 1110057K04 gene mm
MOUSE430_2:1440295_AT RIKEN cDNA 1110057K04 gene mm
MG-U74CV2:131968_AT RIKEN cDNA 1110057K04 gene, mRNA (cDNA clone MGC:66610 IMAGE:6811681) mm
MOUSE430_2:1443615_AT RIKEN cDNA 1110057K04 gene, mRNA (cDNA clone MGC:66610 IMAGE:6811681) mm
MOE430B:1443615_AT RIKEN cDNA 1110057K04 gene, mRNA (cDNA clone MGC:66610 IMAGE:6811681) mm
MG-U74AV2:161190_R_AT RIKEN cDNA 1110057K04 gene, mRNA (cDNA clone MGC:66610 IMAGE:6811681) mm
MU19KSUBB:TC29925_AT RIKEN cDNA 1110057K04 gene, mRNA (cDNA clone MGC:66610 IMAGE:6811681) mm
MU19KSUBB:TC33802_AT RIKEN cDNA 1110057K04 gene, mRNA (cDNA clone MGC:66610 IMAGE:6811681) mm
RG-U34B:RC_AI045583_AT similar to hypothetical protein FLJ21820 (predicted) rn
RAE230B:1380943_AT similar to hypothetical protein FLJ21820 (predicted) rn
RAT230_2:1380943_AT similar to hypothetical protein FLJ21820 (predicted) rn
RAE230B:1397009_AT Similar to hypothetical protein FLJ21820 (predicted) rn
RAT230_2:1397009_AT Similar to hypothetical protein FLJ21820 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01705 Hypothetical protein F26A3.1 [Caenorhabditis elegans] ref|NP_492129.1| F26A3.1 [Caenorhabditis elegans] 0.0
blast CAB01705 Hypothetical protein F26A3.1 [Caenorhabditis elegans] ref|NP_492129.1| F26A3.1 [Caenorhabditis elegans] 1.0E-165
blast CAE74452 Hypothetical protein CBG22193 [Caenorhabditis briggsae] 1.0E-157
blast CAE74452 Hypothetical protein CBG22193 [Caenorhabditis briggsae] 1.0E-144
blast CAB01702 Hypothetical protein F26A3.2 [Caenorhabditis elegans] ref|NP_492130.1| F26A3.2 [Caenorhabditis elegans] 4.0E-86
blast XP_694700 PREDICTED: similar to CG9186-PB, isoform B [Danio rerio] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 9.1E-17
Sequence
Target Sequence 
>C. ELEGANS:178607_S_AT
tgtgaaagagcacctgccacgtggaaagcaactgtacattttggggcatagcattggttc
gtatatgatgttaagaatcattcctgaagtgataaaagaaggattccacgtggaaaaagc
tgttggactgtttccaacgatagttcatatggcaaactcaccaaatgggaaacgattaca
tggaactttagctacattgaaccatcatgattggctcacaaaaacgatttgctggtgggt
ggattacctgccaaactcgatcaaaaaatttcttgttggattgaacctgagacatcctaa
tactcccccagagatcgtcgatgcggcagttgagcttgtccatatggatgtgttcagaaa
tatagttcacatgtcaaacgatgaacttgatatcgttttagacctagatgagcgtctttt
ggaaaaacaagacgtggttcatttctattatggcctcaaggatggatggtgtccagtgca
gcatggatactccatgcgggacagacttggtgaggagcaggtcacattggacgaagacaa
ttgtgaacacgcttttgttatttctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGAAAGAGCACCTGCCACGTGGA 393 555 324 Antisense
TTGGGGCATAGCATTGGTTCGTATA 101 699 364 Antisense
ATTGAACCATCATGATTGGCTCACA 295 5 519 Antisense
TGCTGGTGGGTGGATTACCTGCCAA 225 581 553 Antisense
GGATTACCTGCCAAACTCGATCAAA 546 509 564 Antisense
CCCCAGAGATCGTCGATGCGGCAGT 262 261 629 Antisense
ATGCGGCAGTTGAGCTTGTCCATAT 137 43 644 Antisense
GTGGTTCATTTCTATTATGGCCTCA 497 489 757 Antisense
GTGTCCAGTGCAGCATGGATACTCC 101 487 792 Antisense
GGATACTCCATGCGGGACAGACTTG 692 507 808 Antisense
GTGAACACGCTTTTGTTATTTCTGA 135 483 866 Antisense
Sequence Source Affymetrix Proprietary Database