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[178605_s_at]

Description C25A1.1 /REP_DB=WormBase Gene ID /WP=CE08366 /TR=O17594 /GB=CAB02762.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 92      6grp_total > 89      4grp_total > 51      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 269.6
(-0.7)
P 		268.1
(-1.1)
P 		260.8
(-3)
P 		283.4
(3)
P 		23
B 208.3
(-3)
P 		283.8
(3)
P 		260.4
(1.1)
P 		265.6
(1.6)
P 		76
C 308.9
(3)
P 		273.5
(0.5)
P 		275.6
(0.7)
P 		223.2
(-3)
P 		86
avr 262.3
(-1.3) 		275.1
(3) 		265.6
(-0.2) 		257.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 226.9
(-2.9)
P 		220
(-3)
P 		252.3
(-2.5)
P 		220.3
(-3)
P 		399
(-0.5)
P 		645.9
(3)
P 		426
B 286.9
(-0.2)
P 		264.3
(-0.7)
P 		139.9
(-3)
P 		223.6
(-1.4)
P 		413.1
(2.1)
P 		459.8
(3)
P 		320
C 279.5
(-2)
P 		269.4
(-2.5)
P 		278.4
(-2.1)
P 		256.2
(-3)
P 		393.4
(2.6)
P 		403.1
(3)
P 		147
avr 264.4
(-2.1) 		251.2
(-2.4) 		223.5
(-3) 		233.4
(-2.8) 		401.8
(0.8) 		502.9
(3) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 98.2
(3)
P 		58.2
(-1.2)
P 		68.2
(-0.2)
P 		41.5
(-3)
P 		57
B 66.4
(1.4)
P 		70.1
(3)
P 		60.3
(-1.4)
P 		56.6
(-3)
P 		14
C 102.2
(3)
P 		78.6
(0.8)
P 		96.1
(2.4)
P 		37.6
(-3)
P 		65
avr 88.9
(3) 		69
(0.3) 		74.9
(1.1) 		45.2
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 41.8
(-3)
P 		78.2
(-1.1)
P 		54.9
(-2.3)
P 		55.9
(-2.3)
P 		120.4
(1.1)
P 		157.3
(3)
P 		116
B 99.8
(-0.1)
P 		88
(-0.6)
P 		34
(-3)
P 		59.2
(-1.9)
P 		167.8
(2.8)
P 		171.5
(3)
P 		138
C 103.6
(0.7)
P 		82.2
(-0.8)
P 		70.9
(-1.6)
P 		51.5
(-3)
P 		127.3
(2.5)
P 		134.9
(3)
P 		83
avr 81.7
(-1.3) 		82.8
(-1.3) 		53.3
(-3) 		55.5
(-2.9) 		138.5
(2) 		154.6
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178605_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1227
Sequence Type Exemplar sequence
Representative Public ID C25A1.1 NCBI
Target Description C25A1.1 /REP_DB=WormBase Gene ID /WP=CE08366 /TR=O17594 /GB=CAB02762.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060274 NCBI Caenorhabditis elegans C25A1.1 (C25A1.1) mRNA, complete cds. 11/11 None
SNAP00000000652 ENSEMBL cdna:SNAP chromosome:CEL140:I:10170510:10171306:1 11/11 None
GENEFINDER00000000678 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10170510:10171306:1 11/11 None
C25A1.1 ENSEMBL cdna:known chromosome:CEL140:I:10170510:10171650:1 gene:C25A1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10170440-10171237(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25A1.1
Entrez Gene 172880 Entrez gene
SwissProt O17594 EMBL-EBI
WormBase CE08366 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600088_AT similar to CG14480-PA cfa
CANINE:1587107_AT similar to CG14480-PA cfa
CANINE_2:CFA.11613.1.A1_A_AT similar to CG14480-PA cfa
CANINE_2:CFA.11613.3.A1_AT similar to CG14480-PA cfa
CANINE_2:CFAAFFX.13879.1.S1_AT similar to CG14480-PA cfa
CANINE_2:CFAAFFX.13879.1.S1_S_AT similar to CG14480-PA cfa
DROSOPHILA_2:1628029_AT dm
DROSGENOME1:147377_AT dm
CHICKEN:GGA.3089.1.S1_A_AT similar to NEFA-interacting nuclear protein NIP30 gga
HG-U133_PLUS_2:224248_X_AT NEFA-interacting nuclear protein NIP30 hs
HG-U133B:224248_X_AT NEFA-interacting nuclear protein NIP30 hs
HG-U133_PLUS_2:223406_X_AT NEFA-interacting nuclear protein NIP30 hs
HG-U133B:223406_X_AT NEFA-interacting nuclear protein NIP30 hs
HG-U133_PLUS_2:217896_S_AT NEFA-interacting nuclear protein NIP30 hs
HG-U133A:217896_S_AT NEFA-interacting nuclear protein NIP30 hs
HG-U133A_2:217896_S_AT NEFA-interacting nuclear protein NIP30 hs
HU35KSUBA:RC_AA226768_AT NEFA-interacting nuclear protein NIP30 hs
HU35KSUBD:RC_AA280297_AT NEFA-interacting nuclear protein NIP30 hs
HU35KSUBD:RC_AA598697_AT NEFA-interacting nuclear protein NIP30 hs
U133_X3P:G13376428_3P_A_AT NEFA-interacting nuclear protein NIP30 hs
U133_X3P:G13182772_3P_A_AT NEFA-interacting nuclear protein NIP30 hs
U133_X3P:G12006226_3P_X_AT NEFA-interacting nuclear protein NIP30 hs
U133_X3P:HS.285017.0.S1_3P_A_AT NEFA-interacting nuclear protein NIP30 hs
HG-U133_PLUS_2:222460_S_AT NEFA-interacting nuclear protein NIP30 hs
HG-U133B:222460_S_AT NEFA-interacting nuclear protein NIP30 hs
HG-U95B:44796_S_AT NEFA-interacting nuclear protein NIP30 hs
HG-U95B:56422_AT NEFA-interacting nuclear protein NIP30 hs
HG-U95C:63796_AT NEFA-interacting nuclear protein NIP30 hs
HG-U95C:52532_R_AT NEFA-interacting nuclear protein NIP30 hs
HG-U95E:72706_AT NEFA-interacting nuclear protein NIP30 hs
MU11KSUBA:AA200691_S_AT RIKEN cDNA 2310065K24 gene mm
MG-U74AV2:95103_AT RIKEN cDNA 2310065K24 gene mm
MG-U74CV2:141029_AT RIKEN cDNA 2310065K24 gene mm
MOE430A:1417243_AT RIKEN cDNA 2310065K24 gene mm
MOUSE430A_2:1417243_AT RIKEN cDNA 2310065K24 gene mm
MOUSE430_2:1417243_AT RIKEN cDNA 2310065K24 gene mm
MU19KSUBA:TC15024_AT RIKEN cDNA 2310065K24 gene (2310065K24Rik), mRNA mm
RG-U34B:RC_AA849734_AT similar to RIKEN cDNA 2310065K24 (predicted) rn
RAE230A:1372913_AT similar to RIKEN cDNA 2310065K24 (predicted) rn
RAT230_2:1372913_AT similar to RIKEN cDNA 2310065K24 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB02762 Hypothetical protein C25A1.1 [Caenorhabditis elegans] ref|NP_492675.1| C25A1.1 [Caenorhabditis elegans] 1.0E-101
blast CAE66860 Hypothetical protein CBG12233 [Caenorhabditis briggsae] 1.0E-77
blast AAH56511 Unknown (protein for MGC:65774) [Danio rerio] ref|NP_956218.1| hypothetical protein LOC334752 [Danio rerio] 4.0E-25
Sequence
Target Sequence 
>C. ELEGANS:178605_S_AT
attagaaaaccgactgacgctactttggttccagaaccggagtactgcaataagacattg
ttcgagcaattaaaaaataataaagatgcaaaacaattggaaatcgacgaagctaagaag
ctcaagaatatggtccgaggtatcgatgaggatgaaagcgtttttctgtcggaactagat
tccacaaagcgtgtggttaaaatgcggatgaaaagagaagagcaagaacttattaaagag
cttgccgtcactcaacatcttgccgcaaatcagccatcctcgtctcgtttcattcttaaa
ccgtcgacatcaaaagttctcggacccccgaaatcaaagcaagccgcatttttgagcact
gcgatcaagagaaagtcaacaagcactgaagagaaaaaacaggaagatgttgtgtcttca
aaagtttcaaaacctgaacctgtgatcaagcaaattggagcactgcaggctttgtgtgaa
tatgatccatcgagtgattcagaaagcgatgcctcatctgatgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTAGAAAACCGACTGACGCTACTT 708 7 85 Antisense
GGTTCCAGAACCGGAGTACTGCAAT 416 507 111 Antisense
GAAAGCGTTTTTCTGTCGGAACTAG 606 359 238 Antisense
TAAAGAGCTTGCCGTCACTCAACAT 123 641 318 Antisense
ACATCTTGCCGCAAATCAGCCATCC 701 105 339 Antisense
GTCTCGTTTCATTCTTAAACCGTCG 697 467 366 Antisense
TCGACATCAAAAGTTCTCGGACCCC 142 601 388 Antisense
GGACCCCCGAAATCAAAGCAAGCCG 299 519 406 Antisense
AGCAAGCCGCATTTTTGAGCACTGC 700 75 422 Antisense
GGAGCACTGCAGGCTTTGTGTGAAT 56 521 541 Antisense
GAAAGCGATGCCTCATCTGATGATG 434 359 586 Antisense
Sequence Source Affymetrix Proprietary Database