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[178604_at]

Description F22D6.6 /REP_DB=WormBase Gene ID /WP=CE05687 /TR=Q19731 /GB=CAA95818.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 66      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 74      6grp_total > 66      4grp_total > 62      6grp_highest_sub > Da      6grp_cgc > 47      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 694.6
(3)
P 		619.7
(0)
P 		679.9
(2.4)
P 		543
(-3)
P 		152
B 684.3
(3)
P 		619.5
(1)
P 		660.8
(2.3)
P 		492.9
(-3)
P 		191
C 758
(3)
P 		537.2
(-2)
P 		528.1
(-2.2)
P 		493.4
(-3)
P 		265
avr 712.3
(3) 		592.1
(-0.6) 		622.9
(0.4) 		509.8
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 688.2
(-1.8)
P 		630.8
(-3)
P 		660.9
(-2.4)
P 		719.9
(-1.2)
P 		664.3
(-2.3)
P 		929.4
(3)
P 		299
B 753.3
(0.8)
P 		595.9
(-2.4)
P 		567.3
(-3)
P 		647.6
(-1.4)
P 		596.3
(-2.4)
P 		860
(3)
P 		293
C 628.4
(-2.6)
P 		606.5
(-3)
P 		975
(3)
P 		782.3
(-0.1)
P 		712.3
(-1.3)
P 		798.7
(0.1)
P 		369
avr 690
(-1.1) 		611.1
(-3) 		734.4
(-0.1) 		716.6
(-0.5) 		657.6
(-1.9) 		862.7
(3) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 252.9
(3)
P 		134.5
(-1.1)
P 		177.7
(0.4)
P 		79.5
(-3)
P 		173
B 218.2
(3)
P 		153
(-0.5)
P 		153.1
(-0.5)
P 		105
(-3)
P 		113
C 250.9
(3)
P 		154.5
(-0.4)
P 		184.1
(0.6)
P 		83.2
(-3)
P 		168
avr 240.7
(3) 		147.3
(-0.7) 		171.6
(0.3) 		89.2
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 126.9
(-3)
P 		224.4
(2.9)
P 		143.9
(-2)
P 		182.6
(0.4)
P 		200.5
(1.4)
P 		226.3
(3)
P 		99
B 262.1
(1.1)
P 		198.3
(-1)
P 		137.8
(-3)
P 		171.5
(-1.9)
P 		242.3
(0.4)
P 		320.7
(3)
P 		183
C 232.9
(1.1)
P 		185.1
(-1.5)
P 		248.2
(2)
P 		157.3
(-3)
P 		230.5
(1)
P 		267.4
(3)
P 		110
avr 207.3
(-0.8) 		202.6
(-1.1) 		176.6
(-2.6) 		170.5
(-3) 		224.4
(0.2) 		271.5
(3) 		101
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1513
Sequence Type Exemplar sequence
Representative Public ID F22D6.6 NCBI
Target Description F22D6.6 /REP_DB=WormBase Gene ID /WP=CE05687 /TR=Q19731 /GB=CAA95818.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059608(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059608 NCBI Caenorhabditis elegans F22D6.6 (F22D6.6) mRNA, complete cds. 11/11 None
SNAP00000037652 ENSEMBL cdna:SNAP chromosome:CEL140:I:7103620:7106212:1 11/11 None
GENEFINDER00000037663 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7103620:7106212:1 11/11 None
F22D6.6 ENSEMBL cdna:known chromosome:CEL140:I:7103620:7106474:1 gene:F22D6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7103550-7106143(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ekl-1
Ensembl F22D6.6
Entrez Gene 172444 Entrez gene
SwissProt Q19731 EMBL-EBI
WormBase CE05687 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95818 Hypothetical protein F22D6.6 [Caenorhabditis elegans] ref|NP_492009.1| F22D6.6 [Caenorhabditis elegans] 0.0
blast CAE73096 Hypothetical protein CBG20475 [Caenorhabditis briggsae] 0.0
blast CAE70293 Hypothetical protein CBG16814 [Caenorhabditis briggsae] 5.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR008191 EMBL-EBI Maternal tudor protein 4.3E-21
Pfam IPR008191 EMBL-EBI Maternal tudor protein 2.9E-16
Sequence
Target Sequence 
>C. ELEGANS:178604_AT
gttcgttttctggattcaggcggtcgtgatatggttctcactggatctctttataagatt
caccgacagcattgccggttcccaccgatgtgcttgcgcctttcaatgcatggaattacc
tcgagtgaatcagtcgtcagaaaatggacttcagccgaaacatcccgattcagaacttgc
cttcgcgaggatgttccaatcttcattaatatcgacgatattgctcccttgattctacca
ccagacgataaaaaagatccacgtgctcatatggcaaagcatgtgctcatggttagcgat
gtttcttacatggatgaatcgaaaagcctactcgatcggttcaccgacaaagatgaagcc
gtgcgcgctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCGTTTTCTGGATTCAGGCGGTC 152 415 1426 Antisense
TATGGTTCTCACTGGATCTCTTTAT 186 655 1455 Antisense
GATTCACCGACAGCATTGCCGGTTC 426 429 1482 Antisense
TGCTTGCGCCTTTCAATGCATGGAA 534 577 1516 Antisense
ATGGACTTCAGCCGAAACATCCCGA 626 51 1569 Antisense
AACATCCCGATTCAGAACTTGCCTT 4 137 1584 Antisense
AACTTGCCTTCGCGAGGATGTTCCA 147 137 1599 Antisense
ATATCGACGATATTGCTCCCTTGAT 92 21 1634 Antisense
CCTTGATTCTACCACCAGACGATAA 284 269 1652 Antisense
GATCCACGTGCTCATATGGCAAAGC 604 415 1681 Antisense
ACAAAGATGAAGCCGTGCGCGCTGC 443 111 1772 Antisense
Sequence Source Affymetrix Proprietary Database