[Home] | [Total List]

[178603_s_at]

Description T06E6.1 /REP_DB=WormBase Gene ID /WP=CE13313 /TR=O45757 /GB=CAB03312.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 83      6grp_total > 69      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1301
1 2 3 4 range
A 796.6
(-2.2)
P 		662.5
(-3)
P 		738.5
(-2.5)
P 		1625.6
(3)
P 		963
B 797.8
(-2.7)
P 		747
(-3)
P 		751.5
(-3)
P 		1963.6
(3)
P 		1217
C 762.9
(-2.6)
P 		709.1
(-3)
P 		892.3
(-1.6)
P 		1516.4
(3)
P 		807
avr 785.8
(-2.5) 		706.2
(-3) 		794.1
(-2.5) 		1701.9
(3) 		996

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 497
1 2 3 4 5 6 range
A 406.1
(-1.8)
P 		389.1
(-2.1)
P 		330.4
(-3)
P 		472.7
(-0.7)
P 		474.9
(-0.7)
P 		706
(3)
P 		376
B 477.4
(-0.5)
P 		454
(-0.9)
P 		305
(-3)
P 		403.3
(-1.6)
P 		608.6
(1.4)
P 		721.3
(3)
P 		416
C 546
(-0.5)
P 		362.2
(-3)
P 		437.6
(-2)
P 		375.7
(-2.8)
P 		517.9
(-0.9)
P 		801.9
(3)
P 		440
avr 476.5
(-1.2) 		401.8
(-2.3) 		357.7
(-3) 		417.2
(-2.1) 		533.8
(-0.3) 		743.1
(3) 		385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 290.1
(3)
P 		143.8
(-3)
P 		193.1
(-1)
P 		238
(0.9)
P 		146
B 254.4
(-1)
P 		184.5
(-2.7)
P 		174.1
(-3)
P 		418.4
(3)
P 		244
C 252.5
(-0.3)
P 		203.9
(-3)
P 		311
(3)
P 		255.7
(-0.1)
P 		107
avr 265.7
(1.2) 		177.4
(-3) 		226.1
(-0.7) 		304
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 74.9
(-2.8)
P 		138.4
(1)
P 		72
(-3)
P 		119.9
(-0.1)
P 		143.3
(1.3)
P 		171.9
(3)
P 		100
B 166.1
(-0.2)
P 		151.1
(-0.6)
P 		74.1
(-3)
P 		106.8
(-2)
P 		247.3
(2.3)
P 		269
(3)
P 		195
C 202.4
(0.9)
P 		110.5
(-1.9)
P 		111.4
(-1.9)
P 		75.6
(-3)
P 		167.6
(-0.1)
P 		268.4
(3)
P 		193
avr 147.8
(-0.5) 		133.3
(-1.1) 		85.8
(-3) 		100.8
(-2.4) 		186.1
(1) 		236.4
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178603_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14381
Sequence Type Exemplar sequence
Representative Public ID T06E6.1 NCBI
Target Description T06E6.1 /REP_DB=WormBase Gene ID /WP=CE13313 /TR=O45757 /GB=CAB03312.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074423(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074423 NCBI Caenorhabditis elegans T06E6.1 (T06E6.1) mRNA, complete cds. 11/11 None
SNAP00000027741 ENSEMBL cdna:SNAP chromosome:CEL140:V:15395791:15397536:-1 11/11 None
GENEFINDER00000027756 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15395791:15397536:-1 11/11 None
T06E6.1 ENSEMBL cdna:known chromosome:CEL140:V:15395481:15397536:-1 gene:T06E6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15395790-15397536(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06E6.1
Entrez Gene 180039 Entrez gene
SwissProt O45757 EMBL-EBI
WormBase CE13313 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603843_AT similar to NOP seven associated protein 1 cfa
CANINE_2:CFA.14695.1.A1_S_AT similar to NOP seven associated protein 1 cfa
CANINE_2:CFAAFFX.23821.1.S1_S_AT similar to NOP seven associated protein 1 cfa
HG-U133A:221712_S_AT WD repeat domain 74 hs
HG-U133_PLUS_2:221712_S_AT WD repeat domain 74 hs
HG-U133A_2:221712_S_AT WD repeat domain 74 hs
HU35KSUBA:RC_AA425420_AT WD repeat domain 74 hs
HG-U133A:218278_AT WD repeat domain 74 hs
HG-U133_PLUS_2:218278_AT WD repeat domain 74 hs
HG-U133A_2:218278_AT WD repeat domain 74 hs
U133_X3P:G8922421_3P_AT WD repeat domain 74 hs
U133_X3P:G13623492_3P_S_AT WD repeat domain 74 hs
HG-U95B:45760_AT WD repeat domain 74 hs
MU11KSUBA:AA617080_G_AT WD repeat domain 74 mm
MU11KSUBA:AA617080_AT WD repeat domain 74 mm
MG-U74AV2:95685_AT WD repeat domain 74 mm
MOE430A:1416890_AT WD repeat domain 74 mm
MOUSE430A_2:1416890_AT WD repeat domain 74 mm
MOUSE430_2:1416890_AT WD repeat domain 74 mm
MU19KSUBB:TC27825_S_AT WD repeat domain 74, mRNA (cDNA clone MGC:37386 IMAGE:4977054) mm
MU19KSUBC:TC40532_AT WD repeat domain 74, mRNA (cDNA clone MGC:37386 IMAGE:4977054) mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03312 Hypothetical protein T06E6.1 [Caenorhabditis elegans] ref|NP_506824.1| T06E6.1 [Caenorhabditis elegans] 0.0
blast CAE61628 Hypothetical protein CBG05554 [Caenorhabditis briggsae] 0.0
blast AAH77693 MGC89952 protein [Xenopus tropicalis] ref|NP_001005144.1| MGC89952 protein [Xenopus tropicalis] 1.0E-56
Sequence
Target Sequence 
>C. ELEGANS:178603_S_AT
aatactcgccgcaaattccatcggagaaatgggacttttcgatttgcgcagtaaagttca
tccgatgtgcaagttcaagggacaagccggatctatccggagcatcacagctcatccaac
actgccgctggctgcttccgttggaattgatcgatttttgagagtacacgatttgcaatc
gaggaagctgattcataagatttactgcaaaacgcgcctgaatcgtgtcctactccgtga
taatttatcaattttgaacgacaaaaagcctgcatcgaaaaaggagattaatgaggatga
aacggaatacggaaatatgaccaaagatggatatcgatctgaaaatgaggatgacgaaga
tgatgatgacgtcattgaggaggatgacgtgtggggagtgatggaaccggtgaaaagggc
gaaaaaatcatccgacgacgatgtggaggaaattcaaattacatctgaaacaattgcggt
gccgtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATACTCGCCGCAAATTCCATCGGA 95 173 690 Antisense
GGGACTTTTCGATTTGCGCAGTAAA 365 495 720 Antisense
TGCGCAGTAAAGTTCATCCGATGTG 529 581 734 Antisense
GTTCAAGGGACAAGCCGGATCTATC 157 443 762 Antisense
TATCCGGAGCATCACAGCTCATCCA 272 657 783 Antisense
GCTGGCTGCTTCCGTTGGAATTGAT 604 293 816 Antisense
AAGATTTACTGCAAAACGCGCCTGA 691 151 886 Antisense
CAAAACGCGCCTGAATCGTGTCCTA 80 191 897 Antisense
TCGTGTCCTACTCCGTGATAATTTA 218 605 912 Antisense
AGGGCGAAAAAATCATCCGACGACG 177 57 1105 Antisense
TCTGAAACAATTGCGGTGCCGTCGA 242 607 1153 Antisense
Sequence Source Affymetrix Proprietary Database