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[178602_at]

Description M04C9.1 /REP_DB=WormBase Gene ID /WP=CE12400 /TR=P90930 /GB=CAB06019.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 21      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 90      6grp_total > 31      4grp_total > 61      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 99.5
(3)
P 		94.8
(2.4)
P 		69.5
(-0.9)
P 		53.2
(-3)
P 		46
B 115.4
(2.4)
P 		88.4
(0.5)
P 		123.9
(3)
P 		38.1
(-3)
P 		86
C 117.2
(0.7)
P 		97.1
(-1.3)
P 		139.6
(3)
P 		80.9
(-3)
P 		59
avr 110.7
(3) 		93.4
(1) 		111
(3) 		57.4
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 142.3
(1.3)
P 		128.3
(0.6)
P 		180.1
(3)
P 		133.9
(0.9)
P 		66.7
(-2.2)
P 		49.5
(-3)
P 		131
B 144.9
(-0.3)
P 		191.1
(1.2)
P 		245.3
(3)
P 		153.1
(-0.1)
P 		104.9
(-1.7)
P 		64.3
(-3)
P 		181
C 146.6
(0.8)
P 		203
(3)
P 		154.7
(1.1)
P 		130.3
(0.2)
P 		80.2
(-1.7)
P 		47
(-3)
P 		156
avr 144.6
(0.9) 		174.1
(2.2) 		193.4
(3) 		139.1
(0.7) 		83.9
(-1.7) 		53.6
(-3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 36.2
(3)
P 		20.6
(-0.3)
P 		18.2
(-0.8)
P 		7.8
(-3)
P 		28
B 36.8
(3)
P 		21.8
(-0.1)
P 		28.7
(1.3)
P 		8.1
(-3)
P 		29
C 38.8
(1.3)
P 		27.9
(-0.6)
P 		48.7
(3)
P 		13.6
(-3)
P 		35
avr 37.3
(3) 		23.4
(-0) 		31.9
(1.8) 		9.8
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 26.2
(-0.5)
P 		45.6
(3)
P 		39.2
(1.9)
P 		34
(0.9)
P 		20.1
(-1.6)
P 		12.1
(-3)
P 		34
B 50.4
(1)
P 		63.6
(3)
P 		59.6
(2.4)
P 		40.5
(-0.5)
P 		42.6
(-0.2)
P 		24
(-3)
P 		40
C 54.4
(2)
P 		61.9
(3)
P 		39.4
(0.1)
P 		26.2
(-1.6)
P 		25.9
(-1.7)
P 		15.7
(-3)
P 		46
avr 43.7
(1) 		57
(3) 		46.1
(1.4) 		33.6
(-0.5) 		29.5
(-1.2) 		17.3
(-3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2013
Sequence Type Exemplar sequence
Representative Public ID M04C9.1 NCBI
Target Description M04C9.1 /REP_DB=WormBase Gene ID /WP=CE12400 /TR=P90930 /GB=CAB06019.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060089(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060089 NCBI Caenorhabditis elegans M04C9.1 (M04C9.1) mRNA, complete cds. 11/11 None
SNAP00000035486 ENSEMBL cdna:SNAP chromosome:CEL140:I:9358485:9360721:-1 11/11 None
GENEFINDER00000035491 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9358485:9362679:-1 11/11 None
M04C9.1 ENSEMBL cdna:known chromosome:CEL140:I:9358485:9360721:-1 gene:M04C9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9358415-9360652(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M04C9.1
Entrez Gene 187438 Entrez gene
SwissProt P90930 EMBL-EBI
WormBase CE12400 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB06019 Hypothetical protein M04C9.1 [Caenorhabditis elegans] ref|NP_492490.1| M04C9.1 [Caenorhabditis elegans] 1.0E-141
blast CAB06019 Hypothetical protein M04C9.1 [Caenorhabditis elegans] ref|NP_492490.1| M04C9.1 [Caenorhabditis elegans] 1.0E-114
blast CAB06022 Hypothetical protein M04C9.3 [Caenorhabditis elegans] ref|NP_492491.2| M04C9.3 [Caenorhabditis elegans] 1.0E-110
blast CAB06019 Hypothetical protein M04C9.1 [Caenorhabditis elegans] ref|NP_492490.1| M04C9.1 [Caenorhabditis elegans] 1.0E-104
blast CAE74446 Hypothetical protein CBG22181 [Caenorhabditis briggsae] 6.0E-62
blast CAE74446 Hypothetical protein CBG22181 [Caenorhabditis briggsae] 1.0E-26
blast CAE74446 Hypothetical protein CBG22181 [Caenorhabditis briggsae] 7.0E-26
blast CAE72320 Hypothetical protein CBG19464 [Caenorhabditis briggsae] 2.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.0E-126
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 4.9E-11
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.4E-98
Pfam IPR000816 EMBL-EBI Peptidase C15, pyroglutamyl peptidase I 6.1E-5
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 3.1E-30
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 4.9E-11
Pfam IPR010381 EMBL-EBI Caenorhabditis elegans protein of unknown function DUF976 1.4E-98
Sequence
Target Sequence 
>C. ELEGANS:178602_AT
gtgatattccatttccacattctcgtgaagttgtgatgaaatatccattttccaatttta
gaaaacaattttttcaaatttctacaacaaaaattgctgaattatcattatttcagataa
aaggaatagcaatagttggttttgaaacctctgaaaatgcgacaaatccatccaatgatg
tcatggaacaaatttgctctgaacaatattctgacaagatgatcttcctcatcaaatttc
cgttatcctatgatccattaaaacagaaaattgatgaattatttgaatgccctggagttg
tggcatttcactttgagactcatttggtgaagaatacaatttatgtggaaaaaaaagcat
ttcaaagtggatatcatcaaaaagatgaaaaaggatatttaccagaaggaaataaagttt
catgtgaaagtgttgataataccctggaaactatcatagact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGATATTCCATTTCCACATTCTCG 89 485 140 Antisense
CCATTTCCACATTCTCGTGAAGTTG 42 271 148 Antisense
AAATGCGACAAATCCATCCAATGAT 318 119 294 Antisense
ATTTGCTCTGAACAATATTCTGACA 646 17 331 Antisense
CTGACAAGATGATCTTCCTCATCAA 212 239 350 Antisense
TCCTCATCAAATTTCCGTTATCCTA 399 591 365 Antisense
ATTTCCGTTATCCTATGATCCATTA 471 17 375 Antisense
GAATTATTTGAATGCCCTGGAGTTG 23 323 415 Antisense
GTTGTGGCATTTCACTTTGAGACTC 152 437 436 Antisense
GAAAGTGTTGATAATACCCTGGAAA 696 359 565 Antisense
AATACCCTGGAAACTATCATAGACT 390 171 577 Antisense
Sequence Source Affymetrix Proprietary Database