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[178601_at]

Description R10E8.2 /REP_DB=WormBase Gene ID /WP=CE16312 /TR=O17999 /GB=CAB04645.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.3
(3)
A 		3.2
(2.5)
A 		2
(-3)
A 		3.1
(2.1)
A 		1
B 24.3
(3)
A 		9.2
(-1.2)
A 		5.8
(-2.2)
A 		2.9
(-3)
A 		21
C 3.7
(-0.2)
A 		4.4
(0.6)
A 		1.2
(-3)
A 		6.5
(3)
A 		5
avr 10.4
(3) 		5.6
(-0.9) 		3
(-3) 		4.2
(-2) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 13.4
(3)
A 		2
(-2.7)
A 		1.3
(-3)
A 		2.1
(-2.6)
A 		12
(2.3)
A 		2.5
(-2.4)
A 		12
B 4.6
(0.2)
A 		3.5
(-1.9)
A 		3.4
(-2.1)
A 		6.1
(3)
A 		4.5
(0)
A 		2.9
(-3)
A 		3
C 4.9
(-1.1)
A 		3.8
(-1.7)
A 		1.7
(-3)
A 		3.3
(-2)
A 		4.8
(-1.1)
A 		11.6
(3)
A 		10
avr 7.6
(3) 		3.1
(-1.9) 		2.1
(-3) 		3.8
(-1.1) 		7.1
(2.5) 		5.7
(0.9) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.2
(3)
A 		0.7
(-0.8)
A 		0.5
(-2.3)
A 		0.4
(-3)
A 		1
B 7.8
(3)
A 		2.3
(-1.6)
A 		1.3
(-2.4)
A 		0.6
(-3)
A 		7
C 1.2
(2.3)
A 		1.3
(3)
A 		0.4
(-3)
A 		1.1
(1.7)
A 		1
avr 3.4
(3) 		1.4
(-1.4) 		0.7
(-3) 		0.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 2.5
(1)
A 		0.7
(-2.3)
A 		0.3
(-3)
A 		0.5
(-2.6)
A 		3.6
(3)
A 		0.6
(-2.5)
A 		3
B 1.6
(1.8)
A 		1.2
(-0.6)
A 		0.8
(-3)
A 		1.6
(1.8)
A 		1.8
(3)
A 		1.1
(-1.2)
A 		1
C 1.8
(-0.6)
A 		1.2
(-1.6)
A 		0.4
(-3)
A 		0.7
(-2.5)
A 		1.6
(-0.9)
A 		3.9
(3)
A 		4
avr 2
(2) 		1
(-1.3) 		0.5
(-3) 		0.9
(-1.7) 		2.3
(3) 		1.9
(1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14737
Sequence Type Exemplar sequence
Representative Public ID R10E8.2 NCBI
Target Description R10E8.2 /REP_DB=WormBase Gene ID /WP=CE16312 /TR=O17999 /GB=CAB04645.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075169(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075169 NCBI Caenorhabditis elegans R10E8.2 (R10E8.2) mRNA, complete cds. 10/11 None
SNAP00000042681 ENSEMBL cdna:SNAP chromosome:CEL140:V:18256368:18256979:1 11/11 None
GENEFINDER00000042687 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18256368:18256979:1 11/11 None
R10E8.2 ENSEMBL cdna:known chromosome:CEL140:V:18256368:18256977:1 gene:R10E8.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18256367-18256979(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E8.2
Entrez Gene 187774 Entrez gene
SwissProt O17999 EMBL-EBI
WormBase CE36449 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04645 Hypothetical protein R10E8.2 [Caenorhabditis elegans] ref|NP_507570.2| R10E8.2 [Caenorhabditis elegans] 4.0E-82
blast CAB04645 Hypothetical protein R10E8.2 [Caenorhabditis elegans] ref|NP_507570.2| R10E8.2 [Caenorhabditis elegans] 4.0E-80
blast CAB04643 Hypothetical protein R10E8.1 [Caenorhabditis elegans] ref|NP_507568.2| R10E8.1 [Caenorhabditis elegans] 7.0E-66
blast CAB04643 Hypothetical protein R10E8.1 [Caenorhabditis elegans] ref|NP_507568.2| R10E8.1 [Caenorhabditis elegans] 9.0E-64
blast CAB04506 Hypothetical protein F57G4.1 [Caenorhabditis elegans] ref|NP_507457.1| F57G4.1 [Caenorhabditis elegans] 6.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.5E-14
Sequence
Target Sequence 
>C. ELEGANS:178601_AT
gagtctttggattcaggagctctgaaatcaattcacttgagcaccaataaagaggaagaa
atggatttcgatattctcatgaagttgcctcattggaagaacatcgagattctgctgata
aagggatttatagtttctgcaccaattgagcactttatccatttaccagaagttacaatc
acaatgcaatctatcactattccaaatctcaagcttttgaagaagcacttcttgggattg
aagtctgagaagaagtttgttctcaagtacaagttggacggcggtgagatcgctaataat
gtccatgccgtgtttgatcaggcatcaagcagctgcaaaggaagggtcaagcaatgggtg
tatccaaaaagtggcaacatgcaatttcgtgttgagtatcgtcagcatcatggcttcaag
gatcataaatttactttcctggctacccgagatttgcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCTTTGGATTCAGGAGCTCTGA 598 399 40 Antisense
TCGATATTCTCATGAAGTTGCCTCA 262 603 107 Antisense
TAGTTTCTGCACCAATTGAGCACTT 681 651 170 Antisense
TTGAGCACTTTATCCATTTACCAGA 234 705 185 Antisense
GTACAAGTTGGACGGCGGTGAGATC 298 461 306 Antisense
GGTGAGATCGCTAATAATGTCCATG 1 501 322 Antisense
AATGTCCATGCCGTGTTTGATCAGG 699 163 337 Antisense
TGATCAGGCATCAAGCAGCTGCAAA 344 565 354 Antisense
GAAGGGTCAAGCAATGGGTGTATCC 421 335 380 Antisense
TCATAAATTTACTTTCCTGGCTACC 130 599 462 Antisense
TCCTGGCTACCCGAGATTTGCAAGA 219 595 476 Antisense
Sequence Source Affymetrix Proprietary Database