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[178600_at]

Description F26E4.2 /REP_DB=WormBase Gene ID /WP=CE09686 /TR=O18686 /GB=CAB02997.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 01      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 21      6grp_total > 33      4grp_total > 02      6grp_high1_sub > De      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 691
1 2 3 4 range
A 628.1
(-3)
P 		723.5
(-2.2)
P 		706
(-2.3)
P 		1319.3
(3)
P 		691
B 666.7
(-3)
P 		714.4
(-2.1)
P 		806.4
(-0.5)
P 		999.4
(3)
P 		333
C 909.1
(-1.1)
P 		734.3
(-3)
P 		739
(-2.9)
P 		1296.6
(3)
P 		562
avr 734.6
(-2.9) 		724.1
(-3) 		750.5
(-2.7) 		1205.1
(3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1577
1 2 3 4 5 6 range
A 1477.7
(1)
P 		1022.2
(-0.7)
P 		1994.8
(3)
P 		1235.9
(0.1)
P 		673
(-2)
P 		417.5
(-3)
P 		1577
B 1993.8
(3)
P 		1258.5
(-0)
P 		1531.7
(1.1)
P 		1219.6
(-0.2)
P 		966.5
(-1.2)
P 		527.8
(-3)
P 		1466
C 1843.1
(3)
P 		1252.3
(0.4)
P 		907.8
(-1.2)
P 		1063.6
(-0.5)
P 		850.7
(-1.4)
P 		496.6
(-3)
P 		1347
avr 1771.5
(3) 		1177.7
(0.2) 		1478.1
(1.6) 		1173
(0.2) 		830.1
(-1.4) 		480.6
(-3) 		1291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 228.7
(3)
P 		157
(-3)
P 		184.6
(-0.7)
P 		193.1
(0)
P 		72
B 212.6
(2.9)
P 		176.4
(-3)
P 		186.9
(-1.3)
P 		213
(3)
P 		37
C 300.9
(3)
P 		211.1
(-3)
P 		257.6
(0.1)
P 		218.6
(-2.5)
P 		90
avr 247.4
(3) 		181.5
(-3) 		209.7
(-0.4) 		208.2
(-0.6) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 592
1 2 3 4 5 6 range
A 272.4
(0.1)
P 		363.6
(1.7)
P 		434.4
(3)
P 		313.5
(0.8)
P 		203.1
(-1.2)
P 		101.6
(-3)
P 		333
B 693.7
(3)
P 		418.9
(-0.3)
P 		371.9
(-0.9)
P 		323
(-1.5)
P 		392.7
(-0.6)
P 		196.8
(-3)
P 		497
C 683.2
(3)
P 		382.1
(-0.5)
P 		231
(-2.2)
P 		213.9
(-2.4)
P 		275.3
(-1.7)
P 		166.2
(-3)
P 		517
avr 549.8
(3) 		388.2
(0.5) 		345.8
(-0.1) 		283.5
(-1) 		290.4
(-0.9) 		154.9
(-3) 		395
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178600_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1525
Sequence Type Exemplar sequence
Representative Public ID F26E4.2 NCBI
Target Description F26E4.2 /REP_DB=WormBase Gene ID /WP=CE09686 /TR=O18686 /GB=CAB02997.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060191 NCBI Caenorhabditis elegans F26E4.2 (F26E4.2) mRNA, complete cds. 11/11 None
F26E4.2 ENSEMBL cdna:known chromosome:CEL140:I:9766010:9768906:-1 gene:F26E4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026235 6/11 Cross Hyb Matching Probes None
SNAP00000026222 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9765940-9768837(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26E4.2
Entrez Gene 184980 Entrez gene
SwissProt O18686 EMBL-EBI
WormBase CE09686 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02997 Hypothetical protein F26E4.2 [Caenorhabditis elegans] ref|NP_492592.1| F26E4.2 [Caenorhabditis elegans] 2.0E-70
blast CAE60234 Hypothetical protein CBG03806 [Caenorhabditis briggsae] 6.0E-57
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492592.1 1 113-135
F26E4.2 1 113-135
Sequence
Target Sequence 
>C. ELEGANS:178600_AT
aattctccaattgatccatcacaacttgatgaatttgcacaaggaaaacaacaggaagat
ggtgatgaacaaattttcgatgtgaagaagcgcaaaccacaagtgacatacagtggtgat
gggcggcgaatgttggatggtgttgtcgaaaaacaacatgaatcaaatgctctttggaca
actgcaattacaagaggagttgcaaatgaatggcgtgaagaagcaactggtacacgtctt
cagaagacaaagagatatctctccaaagtcacatatgatgcacaagtactagtacgtcaa
acatatcgtcgccatggaactgaaatcctcatcgccacaaatgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTCCAATTGATCCATCACAAC 262 177 28 Antisense
GAAGAAGCGCAAACCACAAGTGACA 160 341 111 Antisense
GTGACATACAGTGGTGATGGGCGGC 68 481 130 Antisense
GCGGCGAATGTTGGATGGTGTTGTC 73 295 150 Antisense
TGCTCTTTGGACAACTGCAATTACA 448 579 195 Antisense
GAAGCAACTGGTACACGTCTTCAGA 130 341 247 Antisense
AGAGATATCTCTCCAAAGTCACATA 699 67 278 Antisense
ATATGATGCACAAGTACTAGTACGT 710 19 300 Antisense
GTACGTCAAACATATCGTCGCCATG 639 455 319 Antisense
CGTCGCCATGGAACTGAAATCCTCA 607 243 334 Antisense
GAAATCCTCATCGCCACAAATGTGA 416 361 349 Antisense
Sequence Source Affymetrix Proprietary Database