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[178599_at]

Description T22G5.7 /REP_DB=WormBase Gene ID /WP=CE13994 /TR=Q9XVI5 /GB=CAB03392.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 67      6grp_total > 67      4grp_total > 03      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 34.5
(-2)
M 		8.6
(-3)
A 		8.3
(-3)
A 		164.4
(3)
P 		156
B 68.6
(-1.7)
M 		35.8
(-3)
A 		45.2
(-2.6)
A 		186.2
(3)
P 		150
C 31.6
(-2.3)
A 		9.6
(-2.9)
A 		5.3
(-3)
A 		219.9
(3)
P 		215
avr 44.9
(-2.1) 		18
(-3) 		19.6
(-2.9) 		190.2
(3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1410
1 2 3 4 5 6 range
A 50.6
(-2.8)
A 		73.2
(-2.7)
A 		122.7
(-2.5)
P 		99.4
(-2.6)
P 		10
(-3)
A 		1419.5
(3)
P 		1410
B 86.9
(-2.8)
P 		60.5
(-2.9)
P 		84.2
(-2.8)
M 		49.2
(-3)
P 		65.9
(-2.9)
P 		1295.6
(3)
P 		1246
C 75.7
(-2.8)
P 		39.8
(-3)
A 		107
(-2.7)
P 		82.9
(-2.8)
M 		95.2
(-2.7)
A 		1325.9
(3)
P 		1286
avr 71.1
(-2.9) 		57.8
(-3) 		104.6
(-2.8) 		77.2
(-2.9) 		57
(-3) 		1347
(3) 		1290
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 12.6
(-0.1)
M 		1.9
(-3)
A 		2.2
(-2.9)
A 		24.1
(3)
P 		22
B 21.9
(-0.5)
M 		8.8
(-3)
A 		10.5
(-2.7)
A 		39.7
(3)
P 		31
C 10.4
(-1.6)
A 		2.8
(-2.8)
A 		1.9
(-3)
A 		37.1
(3)
P 		35
avr 15
(-0.8) 		4.5
(-3) 		4.9
(-2.9) 		33.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 480
1 2 3 4 5 6 range
A 9.3
(-2.9)
A 		26
(-2.6)
A 		26.7
(-2.6)
P 		25.2
(-2.6)
P 		3
(-3)
A 		345.6
(3)
P 		343
B 30.3
(-2.8)
P 		20.1
(-2.9)
P 		20.4
(-2.9)
M 		13
(-3)
P 		26.8
(-2.8)
P 		483.1
(3)
P 		470
C 28.1
(-2.8)
P 		12.2
(-3)
A 		27.2
(-2.8)
P 		16.7
(-2.9)
M 		30.8
(-2.7)
A 		443.9
(3)
P 		432
avr 22.6
(-2.9) 		19.4
(-3) 		24.8
(-2.9) 		18.3
(-3) 		20.2
(-3) 		424.2
(3) 		406
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14735
Sequence Type Exemplar sequence
Representative Public ID T22G5.7 NCBI
Target Description T22G5.7 /REP_DB=WormBase Gene ID /WP=CE13994 /TR=Q9XVI5 /GB=CAB03392.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074042 NCBI Caenorhabditis elegans SaPosin-like Protein family member (spp-12) (spp-12) mRNA, complete cds. 11/11 None
SNAP00000016897 ENSEMBL cdna:SNAP chromosome:CEL140:V:13892519:13892884:1 11/11 None
GENEFINDER00000016905 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13892549:13893852:1 9/11 None
T22G5.7 ENSEMBL cdna:known chromosome:CEL140:V:13892519:13892884:1 gene:T22G5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13892518-13892884(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol spp-12
Ensembl T22G5.7
Entrez Gene 188762 Entrez gene
SwissProt Q9XVI5 EMBL-EBI
WormBase CE13994 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03392 Hypothetical protein T22G5.7 [Caenorhabditis elegans] ref|NP_506443.1| SaPosin-like Protein family member (spp-12) [Caenorhabditis elegans] 2.0E-56
blast CAE66215 Hypothetical protein CBG11457 [Caenorhabditis briggsae] 4.0E-52
blast CAB03387 Hypothetical protein T22G5.2 [Caenorhabditis elegans] ref|NP_506440.1| Lipid Binding Protein family member (lbp-7) [Caenorhabditis elegans] sp|O02323|FABP7_CAEEL Fatty acid-binding protein homolog 6.0E-52
blast CAB03392 Hypothetical protein T22G5.7 [Caenorhabditis elegans] ref|NP_506443.1| SaPosin-like Protein family member (spp-12) [Caenorhabditis elegans] 2.0E-49
blast CAE66210 Hypothetical protein CBG11452 [Caenorhabditis briggsae] 2.0E-39
blast CAA82577 Hypothetical protein T07C4.4 [Caenorhabditis elegans] ref|NP_499290.2| SaPosin-like Protein family member (spp-1) [Caenorhabditis elegans] 5.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR000566 EMBL-EBI Lipocalin-related protein and Bos/Can/Equ allergen 5.5E-18
Sequence
Target Sequence 
>C. ELEGANS:178599_AT
gttgtacttctaatggttgtgcccgcaatctcacttgcgcagccagcttcaccactggta
ctcaagaaatctcacggagcattttgtcatctatgcgaggacctcattaaggatggcaag
gaagctggagatgttgctctcgatgtctggcttgatgaggaaatcggatcccgctgcaaa
gattttggagtgttagcgtcggagtgctttaaggagttgaaagtggctgagcatgacatc
tggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTACTTCTAATGGTTGTGCCCG 582 437 31 Antisense
TCTAATGGTTGTGCCCGCAATCTCA 519 607 39 Antisense
CCAGCTTCACCACTGGTACTCAAGA 209 273 73 Antisense
ATCTCACGGAGCATTTTGTCATCTA 588 31 99 Antisense
TTGTCATCTATGCGAGGACCTCATT 591 707 114 Antisense
GGAAGCTGGAGATGTTGCTCTCGAT 465 529 150 Antisense
TGCTCTCGATGTCTGGCTTGATGAG 26 581 165 Antisense
GAGGAAATCGGATCCCGCTGCAAAG 557 403 187 Antisense
GATTTTGGAGTGTTAGCGTCGGAGT 508 429 211 Antisense
GCGTCGGAGTGCTTTAAGGAGTTGA 484 247 226 Antisense
AAGTGGCTGAGCATGACATCTGGGA 80 159 251 Antisense
Sequence Source Affymetrix Proprietary Database