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[178598_at]

Description ZK262.3 /REP_DB=WormBase Gene ID /WP=CE19323 /TR=Q9XTR8 /GB=CAB16546.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 47      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 200.9
(3)
P 		74
(-1.7)
A 		85.8
(-1.2)
A 		37.2
(-3)
A 		164
B 210.9
(3)
P 		38
(-3)
A 		51.4
(-2.5)
A 		42.2
(-2.9)
A 		173
C 179.3
(3)
P 		90.1
(-1.7)
A 		66.5
(-3)
A 		105.6
(-0.9)
A 		113
avr 197
(3) 		67.4
(-2.7) 		67.9
(-2.7) 		61.7
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 96.9
(3)
A 		60.8
(0.6)
A 		71.2
(1.3)
A 		26.3
(-1.6)
A 		5.3
(-3)
A 		36.5
(-1)
A 		92
B 113.5
(3)
A 		39.8
(-1.1)
A 		79.1
(1.1)
A 		53.5
(-0.3)
A 		7.7
(-2.9)
A 		5.3
(-3)
A 		108
C 6.5
(-2.9)
A 		60.7
(1.5)
A 		80
(3)
A 		5
(-3)
A 		6.8
(-2.9)
A 		5.9
(-2.9)
A 		75
avr 72.3
(2.6) 		53.8
(1) 		76.8
(3) 		28.3
(-1.1) 		6.6
(-3) 		15.9
(-2.2) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 73.1
(3)
P 		16.1
(-2.1)
A 		22.4
(-1.5)
A 		5.5
(-3)
A 		68
B 67.3
(3)
P 		9.4
(-3)
A 		11.9
(-2.7)
A 		9
(-3)
A 		58
C 59.4
(3)
P 		25.9
(-1.8)
A 		23.2
(-2.2)
A 		17.8
(-3)
A 		42
avr 66.6
(3) 		17.1
(-2.3) 		19.2
(-2.1) 		10.8
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 17.9
(1.9)
A 		21.6
(3)
A 		15.5
(1.2)
A 		6.7
(-1.5)
A 		1.6
(-3)
A 		8.9
(-0.8)
A 		20
B 39.5
(3)
A 		13.2
(-1.2)
A 		19.2
(-0.2)
A 		14.2
(-1)
A 		3.1
(-2.8)
A 		2
(-3)
A 		38
C 2.4
(-2.6)
A 		18.5
(2.4)
A 		20.4
(3)
A 		1
(-3)
A 		2.2
(-2.6)
A 		2
(-2.7)
A 		19
avr 19.9
(3) 		17.8
(2.3) 		18.4
(2.5) 		7.3
(-1.3) 		2.3
(-3) 		4.3
(-2.3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14246
Sequence Type Exemplar sequence
Representative Public ID ZK262.3 NCBI
Target Description ZK262.3 /REP_DB=WormBase Gene ID /WP=CE19323 /TR=Q9XTR8 /GB=CAB16546.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075202 NCBI Caenorhabditis elegans ZK262.3 (ZK262.3) mRNA, complete cds. 11/11 None
SNAP00000013660 ENSEMBL cdna:SNAP chromosome:CEL140:V:18417036:18419435:1 11/11 None
GENEFINDER00000013672 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18416925:18426078:1 9/11 None
ZK262.3 ENSEMBL cdna:known chromosome:CEL140:V:18416925:18419435:1 gene:ZK262.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18416924-18419435(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK262.3
Entrez Gene 191267 Entrez gene
SwissProt Q9XTR8 EMBL-EBI
WormBase CE19323 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 0.0
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 1.0E-180
blast CAB16547 Hypothetical protein ZK262.2 [Caenorhabditis elegans] ref|NP_507602.1| ZK262.2 [Caenorhabditis elegans] 1.0E-174
blast CAB16547 Hypothetical protein ZK262.2 [Caenorhabditis elegans] ref|NP_507602.1| ZK262.2 [Caenorhabditis elegans] 1.0E-160
blast CAB16547 Hypothetical protein ZK262.2 [Caenorhabditis elegans] ref|NP_507602.1| ZK262.2 [Caenorhabditis elegans] 1.0E-152
blast CAB16551 Hypothetical protein ZK262.10 [Caenorhabditis elegans] ref|NP_507604.1| Serpentine Receptor, class J family member (srj-26) [Caenorhabditis elegans] 1.0E-131
blast CAE56202 Hypothetical protein CBG23826 [Caenorhabditis briggsae] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 1.4E-54
Pfam IPR002921 EMBL-EBI Lipase, class 3 1.4E-54
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013672 7 314-336,397-416,431-453,466-488,590-612,636-658,673-695
Sequence
Target Sequence 
>C. ELEGANS:178598_AT
gattgttcatgatggactccgccagagccagaaaatcaaggtggtcacgttcggagagcc
tcgagtagggaatatcgagttttccagggcttatgaccaactggtgccttatagtttccg
agtcgtccattccggcgatgtggtgccccatcttcctggatgcgtcaaggatctgtccta
caccccgccggcgggaagtgatgggtcaatgccttgcgaccctgttagcactaatggagg
ctatcaccacgccatcgaaatctggtatcctgggaacatgacccaaggggacccgttcat
ggtttgcaccgggctccctcgggatgaagactttgggtgctcggattctctgaaggtcaa
ccttggggacactaaccaaggtgtctgggatcaccggaactattttggggtagaggtccc
cgactttggaaaaggaggctgcgacccatcgatgacctttaaaggcccgccaactaaaac
tggagtcttgtcgttggtcgggagtgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTTCATGATGGACTCCGCCAG 193 435 537 Antisense
GAGTTTTCCAGGGCTTATGACCAAC 496 397 613 Antisense
ACTGGTGCCTTATAGTTTCCGAGTC 658 95 636 Antisense
CCTGGATGCGTCAAGGATCTGTCCT 299 265 691 Antisense
CCTTGCGACCCTGTTAGCACTAATG 499 267 748 Antisense
GACCCGTTCATGGTTTGCACCGGGC 101 381 826 Antisense
GGCTCCCTCGGGATGAAGACTTTGG 631 497 848 Antisense
GGTGCTCGGATTCTCTGAAGGTCAA 64 501 872 Antisense
GTCTGGGATCACCGGAACTATTTTG 11 471 919 Antisense
GACCCATCGATGACCTTTAAAGGCC 707 371 979 Antisense
AGTCTTGTCGTTGGTCGGGAGTGTT 495 57 1020 Antisense
Sequence Source Affymetrix Proprietary Database