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[178596_at]

Description F14B6.4 /REP_DB=WormBase Gene ID /WP=CE17666 /TR=O62163 /GB=CAB04107.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 50.4
(-3)
P 		89.7
(3)
A 		74
(0.6)
P 		77.3
(1.1)
P 		39
B 61.4
(-1.5)
P 		71.1
(3)
A 		58.1
(-3)
P 		67.9
(1.5)
P 		13
C 44.2
(-2.4)
A 		40.9
(-3)
A 		66.6
(1.4)
P 		76
(3)
P 		35
avr 52
(-3) 		67.2
(1.2) 		66.2
(0.9) 		73.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 49.1
(0.4)
P 		41.6
(-0.8)
A 		39.4
(-1.1)
P 		50.6
(0.7)
A 		27.7
(-3)
A 		65.2
(3)
P 		38
B 50
(3)
P 		48.1
(2.5)
P 		33.7
(-1.4)
A 		27.8
(-3)
A 		49
(2.7)
P 		46.2
(2)
P 		22
C 69.6
(3)
P 		50.7
(0.6)
P 		63.3
(2.2)
P 		32.5
(-1.8)
A 		65.2
(2.4)
P 		23
(-3)
A 		47
avr 56.2
(3) 		46.8
(0.1) 		45.5
(-0.3) 		37
(-3) 		47.3
(0.2) 		44.8
(-0.6) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 18.3
(2.1)
P 		19.5
(3)
A 		19.3
(2.9)
P 		11.3
(-3)
P 		8
B 19.6
(3)
P 		17.5
(0.9)
A 		13.5
(-3)
P 		14.5
(-2)
P 		6
C 14.6
(-1.5)
A 		11.8
(-3)
A 		23.2
(3)
P 		12.8
(-2.5)
P 		11
avr 17.5
(1.8) 		16.3
(0.5) 		18.7
(3) 		12.9
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9.1
(-2.4)
P 		14.8
(2.1)
A 		8.6
(-2.8)
P 		12.8
(0.5)
A 		8.4
(-3)
A 		15.9
(3)
P 		8
B 17.4
(1.8)
P 		16
(1.1)
P 		8.2
(-2.6)
A 		7.4
(-3)
A 		19.9
(3)
P 		17.2
(1.7)
P 		13
C 25.8
(3)
P 		15.5
(-0.2)
P 		16.1
(-0)
P 		6.5
(-3)
A 		21.1
(1.5)
P 		7.7
(-2.6)
A 		19
avr 17.4
(3) 		15.4
(1.6) 		11
(-1.5) 		8.9
(-3) 		16.5
(2.4) 		13.6
(0.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178596_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1534
Sequence Type Exemplar sequence
Representative Public ID F14B6.4 NCBI
Target Description F14B6.4 /REP_DB=WormBase Gene ID /WP=CE17666 /TR=O62163 /GB=CAB04107.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060687(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060687 NCBI Caenorhabditis elegans F14B6.4 (F14B6.4) mRNA, complete cds. 11/11 None
SNAP00000017560 ENSEMBL cdna:SNAP chromosome:CEL140:I:12242191:12246167:1 10/11 None
GENEFINDER00000017562 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12244000:12246836:1 11/11 None
F14B6.4 ENSEMBL cdna:known chromosome:CEL140:I:12244140:12246363:1 gene:F14B6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12244043-12246294(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14B6.4
Entrez Gene 184446 Entrez gene
SwissProt O62163 EMBL-EBI
WormBase CE34170 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8378 galactosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04107 Hypothetical protein F14B6.4 [Caenorhabditis elegans] ref|NP_493088.2| F14B6.4 [Caenorhabditis elegans] 0.0
blast CAB04107 Hypothetical protein F14B6.4 [Caenorhabditis elegans] ref|NP_493088.2| F14B6.4 [Caenorhabditis elegans] 1.0E-149
blast CAA15838 Hypothetical protein C47F8.5 [Caenorhabditis elegans] ref|NP_493116.2| C47F8.5 [Caenorhabditis elegans] 1.0E-94
blast CAA15838 Hypothetical protein C47F8.5 [Caenorhabditis elegans] ref|NP_493116.2| C47F8.5 [Caenorhabditis elegans] 2.0E-94
blast CAA15839 Hypothetical protein C47F8.6 [Caenorhabditis elegans] ref|NP_493115.1| C47F8.6 [Caenorhabditis elegans] 3.0E-92
blast CAA15839 Hypothetical protein C47F8.6 [Caenorhabditis elegans] ref|NP_493115.1| C47F8.6 [Caenorhabditis elegans] 4.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.6E-113
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 1.0E-38
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.6E-113
Pfam IPR002659 EMBL-EBI Glycosyl transferase, family 31 2.6E-113
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493088.2 1 7-24
F14B6.4 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:178596_AT
ggagttgccgtttaagtctctaacaactctgctctacggaaccagcaaggcttcagagtt
caagctcatcggtaaaatcgacgaggacattatgttcttccctgacaagattctaccatt
gctagaacaaaatttgatagacccaagctcggagagcatatatggaatgctttttgcaga
gggaggatatgtgtatcgtgataaagaacatagatggtttgtacctgattcaacctatgg
gtgcgacatgtttcctccatataccgggggcttgttctatctagtcacccaagatgcagc
aaagaaaatcctaaatgcaacaaagcataggatctttattccgatagaggacgcattgat
caacgggatccttgccaacgactgtaaaattcctagaatccacctaccggagatttatgg
agatcatcattcgctaactgatgaagacacacgaggagttcttgcatggcacacgggcaa
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTGCCGTTTAAGTCTCTAACA 218 515 564 Antisense
TCTCTAACAACTCTGCTCTACGGAA 39 613 580 Antisense
GCTCTACGGAACCAGCAAGGCTTCA 30 301 594 Antisense
GAGGACATTATGTTCTTCCCTGACA 136 405 646 Antisense
TTCCCTGACAAGATTCTACCATTGC 97 697 661 Antisense
GTACCTGATTCAACCTATGGGTGCG 75 459 784 Antisense
CTCCATATACCGGGGGCTTGTTCTA 301 235 818 Antisense
GGCTTGTTCTATCTAGTCACCCAAG 503 533 832 Antisense
TGATCAACGGGATCCTTGCCAACGA 613 563 920 Antisense
ATTCCTAGAATCCACCTACCGGAGA 371 7 952 Antisense
AGTTCTTGCATGGCACACGGGCAAA 677 63 1020 Antisense
Sequence Source Affymetrix Proprietary Database