[Home] | [Total List]

[178595_at]

Description W03H9.2 /REP_DB=WormBase Gene ID /WP=CE20135 /TR=Q9U351 /GB=CAB63319.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 07      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 14
(-1.2)
A 		17.2
(-0.6)
A 		36.7
(3)
A 		4.6
(-3)
A 		32
B 29.7
(3)
A 		2
(-3)
A 		22.5
(1.4)
A 		2.4
(-2.9)
A 		28
C 6.3
(-2.7)
A 		9.8
(-2.2)
A 		4.5
(-3)
A 		42.2
(3)
A 		38
avr 16.7
(0.7) 		9.7
(-3) 		21.2
(3) 		16.4
(0.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 5.9
(-2.4)
A 		10.3
(-1.5)
A 		23.4
(1.1)
A 		2.6
(-3)
A 		20.9
(0.6)
A 		33.3
(3)
A 		31
B 4.2
(-2.1)
A 		1.8
(-3)
A 		17.8
(3)
A 		3
(-2.6)
A 		11.2
(0.5)
A 		3.4
(-2.4)
A 		16
C 10.1
(-3)
A 		19.1
(-1.3)
A 		19.3
(-1.3)
A 		18.9
(-1.4)
A 		42.6
(3)
A 		18.6
(-1.4)
A 		33
avr 6.7
(-3) 		10.4
(-1.8) 		20.2
(1.5) 		8.2
(-2.5) 		24.9
(3) 		18.4
(0.9) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.1
(-0)
A 		3.7
(-1)
A 		9.6
(3)
A 		0.7
(-3)
A 		9
B 9.5
(3)
A 		0.5
(-3)
A 		5.2
(0.1)
A 		0.5
(-3)
A 		9
C 2.1
(-2.5)
A 		2.8
(-1.7)
A 		1.6
(-3)
A 		7.1
(3)
A 		6
avr 5.6
(3) 		2.3
(-3) 		5.5
(2.8) 		2.8
(-2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		3.7
(-0.6)
A 		5.1
(0.6)
A 		0.7
(-3)
A 		6.3
(1.5)
A 		8.1
(3)
A 		7
B 1.5
(-1.7)
A 		0.6
(-3)
A 		4.3
(2.6)
A 		0.8
(-2.7)
A 		4.6
(3)
A 		1.3
(-2)
A 		4
C 3.8
(-3)
A 		5.8
(-1.8)
A 		4.9
(-2.3)
A 		3.8
(-3)
A 		13.8
(3)
A 		6.2
(-1.6)
A 		10
avr 2.1
(-2.7) 		3.4
(-1.5) 		4.8
(-0.2) 		1.8
(-3) 		8.2
(3) 		5.2
(0.2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3561
Sequence Type Exemplar sequence
Representative Public ID W03H9.2 NCBI
Target Description W03H9.2 /REP_DB=WormBase Gene ID /WP=CE20135 /TR=Q9U351 /GB=CAB63319.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064553 NCBI Caenorhabditis elegans W03H9.2 (W03H9.2) mRNA, complete cds. 11/11 None
W03H9.2 ENSEMBL cdna:known chromosome:CEL140:II:14143332:14145450:-1 gene:W03H9.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067869 2/11 Cross Hyb Matching Probes A 
SNAP00000006318 2/11 Cross Hyb Matching Probes None
GENEFINDER00000006322 4/11 Cross Hyb Matching Probes None
SNAP00000036503 2/11 Cross Hyb Matching Probes None
GENEFINDER00000036619 2/11 Cross Hyb Matching Probes None
Y54G2A.21 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14143436-14143741(-) 51.59 51.59
Public Domain and Genome References
Gene Title
Ensembl W03H9.2
Entrez Gene 175068 Entrez gene
SwissProt Q9U351 EMBL-EBI
WormBase CE20135 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63319 Hypothetical protein W03H9.2 [Caenorhabditis elegans] ref|NP_496954.1| W03H9.2 [Caenorhabditis elegans] 2.0E-76
blast AAF59577 Hypothetical protein Y54G2A.21 [Caenorhabditis elegans] ref|NP_500270.3| Y54G2A.21 [Caenorhabditis elegans] 1.0E-37
blast CAC14422 Hypothetical protein Y71A12B.7 [Caenorhabditis elegans] ref|NP_493432.1| Y71A12B.7 [Caenorhabditis elegans] 3.0E-23
Sequence
Target Sequence 
>C. ELEGANS:178595_AT
ttcacgattgtattcagtagtttcaaatttcagctacgtcgctgcggatgaaatcacact
cgacattctccagaaacttgagcatcagagcaggctgacagtccgcgttccattgaaagg
gaatgatgcttcgccattcgacggtcatatctggtttaagagcgccacccaagaaactac
taaacacgcaccgcctgatatttcctcaatttacacgctttcacgatgggaaagaattcg
aaaaagcataaaaaagaacgaagcggcgcgccgagcaaagatcgctgaaaaaaatgagga
acgccgtcaaaatgagataacgtttgataagtgggtcgccaagaaaagtacattgaaaaa
gtatggaaaatggcgtaagaagcaggaggcgaagaagctcgagtcggcagaggagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACGATTGTATTCAGTAGTTTCA 360 687 63 Antisense
AGTTTCAAATTTCAGCTACGTCGCT 530 63 81 Antisense
ACCGCCTGATATTTCCTCAATTTAC 558 89 252 Antisense
TATTTCCTCAATTTACACGCTTTCA 136 663 261 Antisense
AATTTACACGCTTTCACGATGGGAA 373 175 270 Antisense
AAAAGAACGAAGCGGCGCGCCGAGC 496 127 314 Antisense
GAGGAACGCCGTCAAAATGAGATAA 544 403 358 Antisense
GATAACGTTTGATAAGTGGGTCGCC 547 401 378 Antisense
AGTGGGTCGCCAAGAAAAGTACATT 443 57 392 Antisense
GGAGGCGAAGAAGCTCGAGTCGGCA 359 513 447 Antisense
GAAGCTCGAGTCGGCAGAGGAGAAA 608 341 456 Antisense
Sequence Source Affymetrix Proprietary Database