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[178594_at]

Description F21G4.4 /REP_DB=WormBase Gene ID /WP=CE09550 /TR=Q93548 /GB=CAB02663.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 166.1
(0)
A 		120.1
(-3)
A 		178.7
(0.9)
A 		210.9
(3)
P 		91
B 127.3
(2.5)
P 		93.7
(-3)
A 		105.9
(-1)
A 		130.4
(3)
P 		37
C 151.9
(-1.1)
P 		108.4
(-3)
A 		124.3
(-2.3)
P 		247.5
(3)
P 		139
avr 148.4
(-0.2) 		107.4
(-3) 		136.3
(-1) 		196.3
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 206.7
(2)
A 		166.3
(-2.3)
A 		205.7
(1.9)
P 		215.8
(3)
P 		159.8
(-3)
A 		189.7
(0.2)
M 		56
B 147.3
(-0.3)
A 		167.4
(1.1)
A 		110.7
(-3)
A 		143.5
(-0.6)
A 		193.2
(3)
M 		174.3
(1.6)
P 		83
C 136.4
(-2.9)
A 		203.3
(-0.3)
M 		170.7
(-1.6)
A 		290
(3)
A 		179
(-1.3)
A 		133.4
(-3)
P 		157
avr 163.5
(-2.9) 		179
(-1.2) 		162.4
(-3) 		216.4
(3) 		177.3
(-1.3) 		165.8
(-2.6) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 60.5
(3)
A 		26.1
(-3)
A 		46.7
(0.6)
A 		30.9
(-2.2)
P 		34
B 40.6
(3)
P 		23.1
(-3)
A 		24.5
(-2.5)
A 		27.8
(-1.4)
P 		18
C 50.3
(3)
P 		31.2
(-3)
A 		43.3
(0.8)
P 		41.7
(0.3)
P 		19
avr 50.5
(3) 		26.8
(-3) 		38.2
(-0.1) 		33.5
(-1.3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 38.1
(-3)
A 		59.2
(3)
A 		44.8
(-1.1)
P 		54.7
(1.7)
P 		48.2
(-0.1)
A 		46.2
(-0.7)
M 		21
B 51.3
(-0.2)
A 		55.7
(0.3)
A 		26.9
(-3)
A 		38
(-1.7)
A 		78.5
(3)
M 		65
(1.4)
P 		52
C 50.5
(-0.7)
A 		62
(3)
M 		43.4
(-3)
A 		58.3
(1.8)
A 		57.9
(1.7)
A 		44.6
(-2.6)
P 		19
avr 46.6
(-0.9) 		59
(2.4) 		38.4
(-3) 		50.3
(0.1) 		61.5
(3) 		51.9
(0.5) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178594_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17135
Sequence Type Exemplar sequence
Representative Public ID F21G4.4 NCBI
Target Description F21G4.4 /REP_DB=WormBase Gene ID /WP=CE09550 /TR=Q93548 /GB=CAB02663.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077260(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077260 NCBI Caenorhabditis elegans F21G4.4 (F21G4.4) mRNA, complete cds. 11/11 None
SNAP00000036632 ENSEMBL cdna:SNAP chromosome:CEL140:X:9897698:9899400:-1 11/11 None
GENEFINDER00000036635 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9897698:9899400:-1 11/11 None
F21G4.4 ENSEMBL cdna:known chromosome:CEL140:X:9897243:9899406:-1 gene:F21G4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9897697-9899400(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21G4.4
Entrez Gene 184793 Entrez gene
SwissProt Q93548 EMBL-EBI
WormBase CE09550 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02663 Hypothetical protein F21G4.4 [Caenorhabditis elegans] ref|NP_509661.1| F21G4.4 [Caenorhabditis elegans] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:178594_AT
ctcggccccattttattcgggccagagccgtacaaactccgagcttgtaaaacatgcatt
cgtctcgctcgacacggtttatccgctagtcgattcacggctgaagaaatagaaaacatg
acagaattgtgccctacccatttagatgagcaactttccgaggaacgagcaaaagcaaag
gcagctttagaagctaaattagctaaacaactgaaacaaatgcaggcaaagcatcgcaaa
gagataaaggaagcggaaatggctaaaactattagaagtacaaaaaagacaaaagtcgga
aaaaatgggaaaatcgcgaaagtcgacaagaaaacagcaaagactgtgaaggaaaaacaa
gttcttgatttgccgcagccgaaaatcgaaatcaacgatgaggatattgatcagtacatc
cttgagcaggcagccccaaagaaaaagaatgtgactcggtggatctgtccaacttgcgac
aagtcctcgaaattcggaagttgtggatgtgtcggatgtggcgactggtatcacatcaca
tgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGGCCCCATTTTATTCGGGCCAG 470 1 151 Antisense
ATTCGGGCCAGAGCCGTACAAACTC 266 1 165 Antisense
GTAAAACATGCATTCGTCTCGCTCG 666 461 197 Antisense
GCTCGACACGGTTTATCCGCTAGTC 423 297 217 Antisense
ATCCGCTAGTCGATTCACGGCTGAA 153 39 231 Antisense
TGTGCCCTACCCATTTAGATGAGCA 17 555 278 Antisense
GTTCTTGATTTGCCGCAGCCGAAAA 439 443 511 Antisense
ATCCTTGAGCAGGCAGCCCCAAAGA 616 39 568 Antisense
GAATGTGACTCGGTGGATCTGTCCA 85 333 597 Antisense
GGATCTGTCCAACTTGCGACAAGTC 225 513 611 Antisense
TGGCGACTGGTATCACATCACATGT 74 545 669 Antisense
Sequence Source Affymetrix Proprietary Database