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[178593_at]

Description F32A7.4 /REP_DB=WormBase Gene ID /WP=CE09845 /TR=P91862 /GB=CAB05500.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 68      6grp_total > 78      4grp_total > 07      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 236.7
(0.5)
P 		181.1
(-3)
A 		199.1
(-1.9)
M 		276.4
(3)
A 		95
B 207.9
(2.1)
P 		169.2
(-3)
A 		214.6
(3)
P 		208.3
(2.2)
M 		45
C 236.9
(3)
P 		154.7
(-3)
M 		185.5
(-0.8)
P 		167.6
(-2.1)
A 		82
avr 227.2
(3) 		168.3
(-3) 		199.7
(0.2) 		217.4
(2) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 163.5
(-3)
A 		202
(-1)
P 		191.9
(-1.5)
P 		182
(-2.1)
P 		166.9
(-2.8)
P 		280.8
(3)
P 		117
B 203.1
(0.8)
P 		161.5
(-1.1)
P 		183.1
(-0.1)
P 		119.2
(-3)
P 		172.5
(-0.6)
P 		251.9
(3)
P 		133
C 167.7
(-3)
P 		213.3
(0.6)
P 		171
(-2.7)
P 		183.4
(-1.8)
P 		244.1
(3)
P 		236.6
(2.4)
P 		76
avr 178.1
(-2) 		192.3
(-1.1) 		182
(-1.7) 		161.5
(-3) 		194.5
(-0.9) 		256.4
(3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 86.2
(3)
P 		39.3
(-3)
A 		52
(-1.4)
M 		40.5
(-2.8)
A 		47
B 66.3
(3)
P 		41.8
(-3)
A 		49.7
(-1.1)
P 		44.4
(-2.4)
M 		25
C 78.4
(3)
P 		44.5
(-1.1)
M 		64.7
(1.4)
P 		28.3
(-3)
A 		50
avr 77
(3) 		41.9
(-2.4) 		55.5
(-0.3) 		37.7
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 30.1
(-3)
A 		71.9
(3)
P 		41.8
(-1.3)
P 		46.2
(-0.7)
P 		50.4
(-0.1)
P 		68.4
(2.5)
P 		42
B 70.7
(0.8)
P 		53.8
(-0.9)
P 		44.5
(-1.8)
P 		31.6
(-3)
P 		70.1
(0.7)
P 		93.9
(3)
P 		62
C 62.2
(0.6)
P 		65.1
(1)
P 		43.5
(-2.1)
P 		36.9
(-3)
P 		79
(3)
P 		79.2
(3)
P 		42
avr 54.3
(-0.7) 		63.6
(0.6) 		43.3
(-2.3) 		38.2
(-3) 		66.5
(1) 		80.5
(3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1184
Sequence Type Exemplar sequence
Representative Public ID F32A7.4 NCBI
Target Description F32A7.4 /REP_DB=WormBase Gene ID /WP=CE09845 /TR=P91862 /GB=CAB05500.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061191(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061191 NCBI Caenorhabditis elegans F32A7.4 (F32A7.4) mRNA, complete cds. 11/11 None
SNAP00000011756 ENSEMBL cdna:SNAP chromosome:CEL140:I:14847035:14851123:1 11/11 None
GENEFINDER00000011767 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14848050:14851123:1 11/11 None
F32A7.4 ENSEMBL cdna:known chromosome:CEL140:I:14848023:14851221:1 gene:F32A7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14847980-14851054(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32A7.4
Entrez Gene 173356 Entrez gene
SwissProt P91862 EMBL-EBI
WormBase CE09845 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1597954_AT similar to FLJ20859 protein isoform 2 cfa
CANINE:1585267_S_AT similar to FLJ20859 protein isoform 2 cfa
CANINE:1585266_AT similar to FLJ20859 protein isoform 2 cfa
CANINE_2:CFA.11898.1.A1_AT similar to FLJ20859 protein isoform 2 cfa
CANINE_2:CFAAFFX.9083.1.S1_AT similar to FLJ20859 protein isoform 2 cfa
CANINE_2:CFAAFFX.9083.1.S1_S_AT similar to FLJ20859 protein isoform 2 cfa
DROSOPHILA_2:1632049_AT dm
DROSGENOME1:146113_AT dm
HG-U133_PLUS_2:223988_X_AT FLJ20859 gene hs
HG-U133B:223988_X_AT FLJ20859 gene hs
HG-U133_PLUS_2:223528_S_AT FLJ20859 gene hs
HG-U133B:223528_S_AT FLJ20859 gene hs
HG-U95C:65912_AT FLJ20859 gene hs
HU35KSUBA:RC_AA447964_AT FLJ20859 gene hs
HG-U133A:218366_X_AT FLJ20859 gene hs
HG-U133_PLUS_2:218366_X_AT FLJ20859 gene hs
HG-U133A_2:218366_X_AT FLJ20859 gene hs
U133_X3P:G12830807_3P_X_AT FLJ20859 gene hs
U133_X3P:G12830807_3P_A_AT FLJ20859 gene hs
U133_X3P:G12232388_3P_X_AT FLJ20859 gene hs
U133_X3P:G12232388_3P_S_AT FLJ20859 gene hs
U133_X3P:HS2.425446.1.A1_3P_AT FLJ20859 gene hs
HG-U133_PLUS_2:1558590_AT FLJ20859 gene hs
HG-U95C:64502_S_AT FLJ20859 gene hs
HG-U95C:65913_S_AT FLJ20859 gene hs
U133_X3P:HS.306836.0.S1_3P_AT FLJ20859 gene hs
HG-U133_PLUS_2:234573_AT FLJ20859 gene hs
HG-U133B:234573_AT FLJ20859 gene hs
MOE430A:1419815_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MOUSE430A_2:1419815_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MOUSE430_2:1419815_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MU11KSUBA:C78784_RC_G_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MU11KSUBA:C78784_RC_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MG-U74AV2:100904_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MOE430A:1428191_S_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MOUSE430A_2:1428191_S_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MOUSE430_2:1428191_S_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MOE430A:1452699_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MOUSE430A_2:1452699_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
MOUSE430_2:1452699_AT DNA segment, Chr 14, ERATO Doi 209, expressed mm
RG-U34C:RC_AI172514_AT similar to FLJ20859 protein rn
RAE230A:1394378_AT similar to FLJ20859 protein rn
RAT230_2:1394378_AT similar to FLJ20859 protein rn
RAE230A:1376497_A_AT similar to FLJ20859 protein rn
RAT230_2:1376497_A_AT similar to FLJ20859 protein rn
Protein Similarities
Method ID Description E-Value
blast CAB05500 Hypothetical protein F32A7.4 [Caenorhabditis elegans] ref|NP_493592.1| F32A7.4 [Caenorhabditis elegans] 0.0
blast CAE72537 Hypothetical protein CBG19719 [Caenorhabditis briggsae] 0.0
blast XP_223974 PREDICTED: similar to FLJ20859 protein [Rattus norvegicus] 2.0E-33
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000011756 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:178593_AT
gtcaaaccggagctttcggtggtcttctcgaggctcgtgattttctattgacacagggaa
ctctggtggattatcggaaattgctgaaatcactagaagaagctgtgatgctatcaccga
aagttgttcgcatcgttgaggattacaatttgagtgattatgagaaatatgcacttttga
tggaagcagtgccacctggacatacagtaccaactatgcttccgacagctacagtattgg
ctccatgtcctcatgatttgggttgtcctctaggagtacacagttcttgtacatttaata
caagatttcagcctattagagccgatggacgcagatcagaaaaagagtccgacggcacag
aagtctccaaattcacatatatgattctggaaaagagccaacgaaaggtcaataacgagc
acactgagcgaattctgaaaaatcggaagctggggggtcacgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAACCGGAGCTTTCGGTGGTCT 99 465 977 Antisense
TCTCGAGGCTCGTGATTTTCTATTG 563 611 1002 Antisense
CAGGGAACTCTGGTGGATTATCGGA 348 203 1030 Antisense
GCAGTGCCACCTGGACATACAGTAC 403 311 1162 Antisense
TACCAACTATGCTTCCGACAGCTAC 275 651 1184 Antisense
CTACAGTATTGGCTCCATGTCCTCA 612 225 1205 Antisense
TGTCCTCATGATTTGGGTTGTCCTC 589 557 1222 Antisense
GTCCTCTAGGAGTACACAGTTCTTG 438 475 1241 Antisense
GATTTCAGCCTATTAGAGCCGATGG 560 427 1280 Antisense
AAGAGTCCGACGGCACAGAAGTCTC 558 153 1319 Antisense
AAATCGGAAGCTGGGGGGTCACGTG 228 1 1416 Antisense
Sequence Source Affymetrix Proprietary Database