[Home] | [Total List]

[178592_at]

Description K06B4.3 /REP_DB=WormBase Gene ID /WP=CE11786 /TR=O17929 /GB=CAB05762.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 53      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 32.6
(3)
A 		19.6
(0.2)
A 		31.2
(2.7)
A 		4.7
(-3)
A 		28
B 40.2
(3)
A 		32.4
(1.7)
A 		14
(-1.3)
A 		3.9
(-3)
A 		36
C 20.3
(3)
A 		7
(-1.6)
A 		3
(-3)
A 		7.3
(-1.5)
A 		17
avr 31
(3) 		19.7
(0.4) 		16.1
(-0.5) 		5.3
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 33.1
(2.6)
A 		11.8
(-1.2)
A 		35.5
(3)
A 		5.8
(-2.3)
A 		5.8
(-2.3)
A 		1.8
(-3)
A 		34
B 2.5
(-3)
A 		18.4
(3)
A 		14.1
(1.4)
A 		15.6
(1.9)
A 		14.9
(1.7)
A 		3.7
(-2.5)
A 		16
C 15.8
(3)
A 		10.7
(0.9)
A 		8.4
(-0.1)
A 		8.9
(0.1)
A 		1.4
(-3)
A 		12.2
(1.5)
A 		14
avr 17.1
(2) 		13.6
(0.4) 		19.3
(3) 		10.1
(-1.1) 		7.4
(-2.3) 		5.9
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 11.9
(3)
A 		4.3
(-1.1)
A 		8.2
(1)
A 		0.7
(-3)
A 		11
B 12.8
(3)
A 		8
(0.6)
A 		3.2
(-1.8)
A 		0.8
(-3)
A 		12
C 6.7
(3)
A 		2
(-1.9)
A 		1
(-3)
A 		1.2
(-2.8)
A 		6
avr 10.5
(3) 		4.8
(-0.6) 		4.1
(-1) 		0.9
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6.1
(1.7)
A 		4.2
(0.1)
A 		7.7
(3)
A 		1.5
(-2.1)
A 		1.8
(-1.8)
A 		0.4
(-3)
A 		7
B 0.9
(-3)
A 		6.1
(3)
A 		3.4
(-0.1)
A 		4.1
(0.7)
A 		6.1
(3)
A 		1.4
(-2.4)
A 		5
C 5.8
(3)
A 		3.3
(0.2)
A 		2.1
(-1.1)
A 		1.8
(-1.4)
A 		0.4
(-3)
A 		4.1
(1.1)
A 		5
avr 4.3
(2.5) 		4.5
(3) 		4.4
(2.8) 		2.5
(-1.8) 		2.8
(-1.1) 		2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178592_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12879
Sequence Type Exemplar sequence
Representative Public ID K06B4.3 NCBI
Target Description K06B4.3 /REP_DB=WormBase Gene ID /WP=CE11786 /TR=O17929 /GB=CAB05762.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074496 NCBI Caenorhabditis elegans K06B4.3 (K06B4.3) mRNA, complete cds. 11/11 None
K06B4.3 ENSEMBL cdna:known chromosome:CEL140:V:15675250:15675568:-1 gene:K06B4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010506 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15675249-15675568(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06B4.3
Entrez Gene 187051 Entrez gene
SwissProt O17929 EMBL-EBI
WormBase CE11786 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05762 Hypothetical protein K06B4.3 [Caenorhabditis elegans] ref|NP_506897.1| K06B4.3 [Caenorhabditis elegans] 1.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506897.1 1 40-62
K06B4.3 1 40-62
Sequence
Target Sequence 
>C. ELEGANS:178592_AT
gttgctgtatactattttccaaatcattagtggagataagtgcggtaagccatcgattgc
ccatcactactatcgttgcggtgatgacaccaacgaatgctgtattgctcttgagatttg
ggtgtacattttgatgggggtcttcatcgtgtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTGTATACTATTTTCCAAATC 500 439 15 Antisense
ATCATTAGTGGAGATAAGTGCGGTA 520 29 37 Antisense
AAGTGCGGTAAGCCATCGATTGCCC 493 157 52 Antisense
ATCGATTGCCCATCACTACTATCGT 697 35 66 Antisense
CCCATCACTACTATCGTTGCGGTGA 552 259 74 Antisense
CTACTATCGTTGCGGTGATGACACC 114 227 81 Antisense
GGTGATGACACCAACGAATGCTGTA 57 501 94 Antisense
ACGAATGCTGTATTGCTCTTGAGAT 413 91 107 Antisense
TTGCTCTTGAGATTTGGGTGTACAT 255 703 119 Antisense
GGGTGTACATTTTGATGGGGGTCTT 628 497 134 Antisense
TTGATGGGGGTCTTCATCGTGTGCT 228 705 145 Antisense
Sequence Source Affymetrix Proprietary Database