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[178591_at]

Description C56A3.1 /REP_DB=WormBase Gene ID /WP=CE09029 /TR=Q18880 /GB=CAB01137.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 02      6grp_cgc > 86      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 24.3
(-2.2)
A 		8.3
(-3)
A 		53.5
(-0.8)
A 		133.2
(3)
P 		125
B 26.5
(-2.3)
A 		8.3
(-3)
A 		24.6
(-2.4)
A 		169.8
(3)
P 		162
C 24.9
(-1.9)
A 		49.9
(-0.2)
A 		8.4
(-3)
A 		96.4
(3)
P 		88
avr 25.2
(-2.8) 		22.2
(-3) 		28.8
(-2.6) 		133.1
(3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5692
1 2 3 4 5 6 range
A 28.9
(-3)
A 		38.7
(-3)
A 		280.9
(-2.7)
P 		5698.3
(3)
P 		3470.7
(0.6)
P 		295.4
(-2.7)
P 		5669
B 45.8
(-3)
A 		33.7
(-3)
A 		235.5
(-2.7)
P 		4852.9
(3)
P 		3548.2
(1.4)
P 		333.5
(-2.6)
P 		4819
C 43.3
(-3)
A 		6.5
(-3)
A 		290.7
(-2.6)
P 		4805.3
(3)
P 		4241.5
(2.3)
P 		194.3
(-2.8)
P 		4799
avr 39.3
(-3) 		26.3
(-3) 		269
(-2.7) 		5118.8
(3) 		3753.5
(1.4) 		274.4
(-2.7) 		5093
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 8.8
(-0.6)
A 		1.8
(-3)
A 		14
(1.1)
A 		19.5
(3)
P 		18
B 8.5
(-1.9)
A 		2.1
(-3)
A 		5.7
(-2.4)
A 		36.2
(3)
P 		34
C 8.3
(-0.6)
A 		14.4
(2.1)
A 		2.9
(-3)
A 		16.3
(3)
P 		13
avr 8.5
(-2.2) 		6.1
(-3) 		7.5
(-2.5) 		24
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1443
1 2 3 4 5 6 range
A 5.3
(-3)
A 		13.8
(-3)
A 		61.2
(-2.8)
P 		1445.2
(3)
P 		1047.3
(1.3)
P 		71.9
(-2.7)
P 		1440
B 15.9
(-3)
A 		11.2
(-3)
A 		57.2
(-2.8)
P 		1285.4
(2.3)
P 		1441.6
(3)
P 		124.4
(-2.5)
P 		1430
C 16.1
(-2.9)
A 		2
(-3)
A 		74
(-2.7)
P 		966.4
(1.2)
P 		1372.5
(3)
P 		65
(-2.7)
P 		1371
avr 12.4
(-3) 		9
(-3) 		64.1
(-2.7) 		1232.3
(2.7) 		1287.1
(3) 		87.1
(-2.6) 		1278
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14714
Sequence Type Exemplar sequence
Representative Public ID C56A3.1 NCBI
Target Description C56A3.1 /REP_DB=WormBase Gene ID /WP=CE09029 /TR=Q18880 /GB=CAB01137.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073958 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-17) (grl-17) mRNA, complete cds. 11/11 None
SNAP00000001399 ENSEMBL cdna:SNAP chromosome:CEL140:V:13564697:13566505:-1 11/11 None
GENEFINDER00000001405 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13564697:13566439:-1 11/11 None
C56A3.1 ENSEMBL cdna:known chromosome:CEL140:V:13564697:13566505:-1 gene:C56A3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13564696-13566505(-) 92.39 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-17
Ensembl C56A3.1
Entrez Gene 183855 Entrez gene
SwissProt Q18880 EMBL-EBI
WormBase CE09029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01137 Hypothetical protein C56A3.1 [Caenorhabditis elegans] ref|NP_506359.1| GRound-Like (grd related) family member (grl-17) [Caenorhabditis elegans] 7.0E-80
blast CAB01137 Hypothetical protein C56A3.1 [Caenorhabditis elegans] ref|NP_506359.1| GRound-Like (grd related) family member (grl-17) [Caenorhabditis elegans] 8.0E-80
blast CAE66293 Hypothetical protein CBG11540 [Caenorhabditis briggsae] 1.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 8.3E-26
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 8.3E-26
Sequence
Target Sequence 
>C. ELEGANS:178591_AT
gatatgcgggtggagccgctgcagccggtgccacagctgcacaagttgacgaagcatccg
agacatcagcaggcgagccaccggtcgatcaggttttccactcaccaaaggaaccatgta
cacaacaagttaaatatatcatgctccgaagcagaaaagtaccaggaggaggtgcaacag
aattggtagaagaagaattggaacaagttgagaatccaccaccacctgtcgaagctacag
ccaatccattggatgctcaactaggagaagacatcgcagcacaacagcaagcagcaacag
aagatgatggagacgatgaatctgccagttctggagatttcaaggctcgagctgcaaaaa
ctgctgttaccgacgaaaagtgcaatagcaagatactacagaagcttgttcttacgaata
ttgccgcaaatgatgccttggcttcgaagaaagcaatccatgataatgctcttcaacaat
tcccagatagcagtgttgacgtcatctgctcaacaacaggcttcacatatcttgtcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATGCGGGTGGAGCCGCTGCAGC 52 425 590 Antisense
CCGGTGCCACAGCTGCACAAGTTGA 638 265 614 Antisense
GCATCCGAGACATCAGCAGGCGAGC 450 309 643 Antisense
GAACAAGTTGAGAATCCACCACCAC 132 353 790 Antisense
GTCGAAGCTACAGCCAATCCATTGG 699 473 817 Antisense
GACATCGCAGCACAACAGCAAGCAG 512 369 859 Antisense
GAGACGATGAATCTGCCAGTTCTGG 105 395 899 Antisense
TTGCCGCAAATGATGCCTTGGCTTC 205 703 1010 Antisense
TGCTCTTCAACAATTCCCAGATAGC 370 579 1056 Antisense
CGTCATCTGCTCAACAACAGGCTTC 57 247 1089 Antisense
AACAGGCTTCACATATCTTGTCAGT 358 137 1104 Antisense
Sequence Source Affymetrix Proprietary Database