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[178590_at]

Description T01C3.9 /REP_DB=WormBase Gene ID /WP=CE12924 /TR=Q22058 /GB=CAB01662.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 19      6grp_total > 97      4grp_total > 21      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 244.2
(3)
P 		189.1
(-0.3)
P 		143.8
(-3)
P 		204.8
(0.6)
P 		100
B 160.8
(-0.2)
P 		167
(0.3)
A 		126
(-3)
A 		201.2
(3)
P 		75
C 171.4
(-2)
P 		161.4
(-3)
A 		185.4
(-0.7)
P 		223.9
(3)
P 		63
avr 192.1
(1.2) 		172.5
(-0.9) 		151.7
(-3) 		210
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 644
1 2 3 4 5 6 range
A 92.1
(-3)
A 		156.4
(-2.4)
P 		124.9
(-2.7)
P 		287.1
(-1.2)
P 		548.5
(1.3)
P 		725.7
(3)
P 		634
B 141.9
(-3)
P 		139.9
(-3)
P 		171.7
(-2.6)
P 		185
(-2.5)
P 		477.1
(0.9)
P 		659.2
(3)
P 		519
C 81.8
(-3)
P 		134.6
(-2.4)
P 		180.5
(-1.9)
P 		213.6
(-1.6)
P 		513.7
(1.7)
P 		637
(3)
P 		555
avr 105.3
(-3) 		143.6
(-2.6) 		159
(-2.4) 		228.6
(-1.7) 		513.1
(1.3) 		674
(3) 		569
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 88.9
(3)
P 		41
(-1.9)
P 		37.6
(-2.2)
P 		30
(-3)
P 		59
B 51.3
(3)
P 		41.2
(0.3)
A 		29.2
(-3)
A 		42.9
(0.7)
P 		22
C 56.7
(1.2)
P 		46.4
(-1.1)
A 		64.6
(3)
P 		37.8
(-3)
P 		27
avr 65.6
(3) 		42.9
(-1.7) 		43.8
(-1.6) 		36.9
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 17
(-3)
A 		55.6
(-1.5)
P 		27.2
(-2.6)
P 		72.8
(-0.9)
P 		165.5
(2.6)
P 		176.7
(3)
P 		160
B 49.4
(-2.8)
P 		46.6
(-2.9)
P 		41.7
(-3)
P 		49
(-2.8)
P 		193.8
(1.5)
P 		245.8
(3)
P 		204
C 30.3
(-3)
P 		41.1
(-2.6)
P 		45.9
(-2.5)
P 		43
(-2.6)
P 		166.2
(1.5)
P 		213.3
(3)
P 		183
avr 32.2
(-3) 		47.8
(-2.5) 		38.3
(-2.8) 		54.9
(-2.2) 		175.2
(1.8) 		211.9
(3) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178590_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14711
Sequence Type Exemplar sequence
Representative Public ID T01C3.9 NCBI
Target Description T01C3.9 /REP_DB=WormBase Gene ID /WP=CE12924 /TR=Q22058 /GB=CAB01662.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074292 NCBI Caenorhabditis elegans T01C3.9 (T01C3.9) mRNA, complete cds. 11/11 None
SNAP00000022417 ENSEMBL cdna:SNAP chromosome:CEL140:V:15007705:15008769:1 11/11 None
GENEFINDER00000022428 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15007705:15008769:1 11/11 None
T01C3.9 ENSEMBL cdna:known chromosome:CEL140:V:15007698:15008921:1 gene:T01C3.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15007704-15008769(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01C3.9
Entrez Gene 180001 Entrez gene
SwissProt Q22058 EMBL-EBI
WormBase CE12924 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01662 Hypothetical protein T01C3.9 [Caenorhabditis elegans] ref|NP_506693.1| T01C3.9 [Caenorhabditis elegans] 1.0E-150
blast CAE66335 Hypothetical protein CBG11586 [Caenorhabditis briggsae] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:178590_AT
gatgaagttgatttgccactcgcggactcgtatattttctacggactcccgtccaacgtg
gaagctttcccgaggatgctccatggaattgaaaagtcggcacacaaggaaaacaaaata
gttttcatcgatattgtcgtgtcgattttagagaaaattcaaattaaggtcgtcagcttt
gaactttacaatcgaaagtgtactgtgccaacgtgggttgctgaactcgtcataacttat
tgtgcgccaattgaggaacagcaacagcgtattgaggaaatccgccgaactcgtgcttca
gttccagttgccatatcggacgcagccaacggatctgccgagatggtcccttccaacacc
actggatcttcaggatcgcccatgtcgaccgctccagtaccagccgcaaagaaagagaag
gtccagtacgaaagtattcgtcaaattcgcccgaacgcccaaggaagatacttcgttccg
gcaagaatgatcaatatggatatcgaaatgagcaacgatgagtactcgccggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAAGTTGATTTGCCACTCGCGG 338 411 307 Antisense
CCACTCGCGGACTCGTATATTTTCT 682 271 322 Antisense
TGGAAGCTTTCCCGAGGATGCTCCA 365 547 365 Antisense
GAAAGTGTACTGTGCCAACGTGGGT 255 357 500 Antisense
GTGGGTTGCTGAACTCGTCATAACT 227 487 519 Antisense
GAACTCGTGCTTCAGTTCCAGTTGC 355 347 593 Antisense
TTCCAGTTGCCATATCGGACGCAGC 146 701 608 Antisense
ACGCAGCCAACGGATCTGCCGAGAT 687 91 626 Antisense
CACCACTGGATCTTCAGGATCGCCC 610 201 663 Antisense
GTATTCGTCAAATTCGCCCGAACGC 658 451 740 Antisense
GAGCAACGATGAGTACTCGCCGGAT 703 389 816 Antisense
Sequence Source Affymetrix Proprietary Database