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[178588_s_at]

Description B0019.1 /REP_DB=WormBase Gene ID /WP=CE19654 /TR=Q9XXU5 /GB=CAA15509.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      4grp_high_8_8 > 52      6grp_highest_nonorm > 62      6grp_total > 02      4grp_total > 59      6grp_cgc > 52      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 526
1 2 3 4 range
A 539.7
(-0.3)
P 		808.9
(3)
P 		586.3
(0.3)
P 		313.4
(-3)
M 		496
B 637.7
(2.2)
P 		615.4
(1.9)
P 		693.8
(3)
P 		283.2
(-3)
P 		411
C 538.1
(0.4)
P 		701.3
(3)
P 		678.7
(2.6)
P 		331.1
(-3)
P 		370
avr 571.8
(0.9) 		708.5
(3) 		652.9
(2.2) 		309.2
(-3) 		399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 491.6
(0)
P 		600.5
(3)
P 		379.3
(-3)
P 		472.3
(-0.5)
P 		499.4
(0.3)
P 		399.1
(-2.5)
P 		221
B 437.5
(0.5)
P 		508.1
(2.7)
P 		449.8
(0.9)
P 		503.6
(2.6)
P 		517.7
(3)
P 		325.4
(-3)
P 		192
C 397.8
(-2.1)
P 		564.8
(3)
P 		430.9
(-1.1)
P 		489.4
(0.7)
P 		455.8
(-0.3)
P 		368.9
(-3)
P 		196
avr 442.3
(-0.6) 		557.8
(3) 		420
(-1.3) 		488.4
(0.8) 		491
(0.9) 		364.5
(-3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 196.5
(3)
P 		175.6
(2.2)
P 		153.3
(1.3)
P 		45.9
(-3)
M 		151
B 203.4
(3)
P 		152
(0.8)
P 		160.8
(1.2)
P 		60.3
(-3)
P 		143
C 178.1
(1.1)
P 		201.6
(1.8)
P 		236.5
(3)
P 		55.8
(-3)
P 		181
avr 192.7
(3) 		176.4
(2.3) 		183.5
(2.6) 		54
(-3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 90.6
(-2.6)
P 		213.6
(3)
P 		82.6
(-3)
P 		119.8
(-1.3)
P 		150.7
(0.1)
P 		97.2
(-2.3)
P 		131
B 152.2
(-0.4)
P 		169.1
(0.6)
P 		109.2
(-3)
P 		133.4
(-1.6)
P 		210.3
(3)
P 		121.4
(-2.3)
P 		101
C 147.5
(1)
P 		172.3
(3)
P 		109.7
(-2.1)
P 		98.4
(-3)
P 		147.5
(1)
P 		123.5
(-1)
P 		74
avr 130.1
(-0.9) 		185
(3) 		100.5
(-3) 		117.2
(-1.8) 		169.5
(1.9) 		114
(-2) 		85
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178588_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1258
Sequence Type Exemplar sequence
Representative Public ID B0019.1 NCBI
Target Description B0019.1 /REP_DB=WormBase Gene ID /WP=CE19654 /TR=Q9XXU5 /GB=CAA15509.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060835 NCBI Caenorhabditis elegans AMine oXidase family member (amx-2) (amx-2) mRNA, complete cds. 11/11 None
GENEFINDER00000019306 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12767877:12773069:-1 11/11 None
B0019.1 ENSEMBL cdna:known chromosome:CEL140:I:12767720:12773081:-1 gene:B0019.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019302 3/11 Cross Hyb Matching Probes None
SNAP00000019304 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12767807-12773000(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol amx-2
Ensembl B0019.1
Entrez Gene 173146 Entrez gene
SwissProt Q9XXU5 EMBL-EBI
WormBase CE32294 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA15509 Hypothetical protein B0019.1 [Caenorhabditis elegans] ref|NP_493236.2| AMine oXidase family member (amx-2) [Caenorhabditis elegans] 0.0
blast CAE63496 Hypothetical protein CBG07969 [Caenorhabditis briggsae] 0.0
blast XP_794903 PREDICTED: similar to Amine oxidase [flavin-containing] A (Monoamine oxidase type A) (MAO-A) [Strongylocentrotus purpuratus] 2.0E-22
blast XP_794903 PREDICTED: similar to Amine oxidase [flavin-containing] A (Monoamine oxidase type A) (MAO-A) [Strongylocentrotus purpuratus] 3.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR002937 EMBL-EBI Amine oxidase 1.4E-51
Pfam IPR002937 EMBL-EBI Amine oxidase 1.5E-57
Sequence
Target Sequence 
>C. ELEGANS:178588_S_AT
atgaacggagccgtacacgcagctggctctgtgagcacatatgtgctccaaatgctctca
gcagcagatgctcaaagtaacggagtccttagggatacaccagtcgagtcgacaactcca
tacgtctacagtacctcctcacactacccaccatcgcttttcgcggctcgaaatgtgcaa
aatgactctggaaatagaaataccactggaaacaattctgtgaactctggaaatactgga
aatcaaacaaatttccaatatgaaactagttcacagtacccgactactgtagaaacacca
acaactactactatgaaacatttcagttttggaaatttggatgtgccagcagttctcgta
aatcaacagcagaatggttacgcctacacgacatcaactcattatccagtacaattatct
tcaaatcgaaatagaatcgactcacgagcaaccccatctccacaagttgtgcaggagttg
caacaagtttcagcaaatgcttccaactcgacggctctccaattggcgtcaagtctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAACGGAGCCGTACACGCAGCTG 586 43 1438 Antisense
ACGCAGCTGGCTCTGTGAGCACATA 632 91 1454 Antisense
TGTGCTCCAAATGCTCTCAGCAGCA 388 557 1479 Antisense
GAGTCCTTAGGGATACACCAGTCGA 291 395 1520 Antisense
CAACTCCATACGTCTACAGTACCTC 53 189 1550 Antisense
CATCGCTTTTCGCGGCTCGAAATGT 411 201 1589 Antisense
AACTAGTTCACAGTACCCGACTACT 66 141 1701 Antisense
ATGTGCCAGCAGTTCTCGTAAATCA 542 47 1778 Antisense
AGAATGGTTACGCCTACACGACATC 648 73 1808 Antisense
ACCCCATCTCCACAAGTTGTGCAGG 699 89 1888 Antisense
GCTCTCCAATTGGCGTCAAGTCTGA 271 299 1951 Antisense
Sequence Source Affymetrix Proprietary Database