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[178586_at]

Description W07G4.6 /REP_DB=WormBase Gene ID /WP=CE03792 /TR=Q20338 /GB=CAB01450.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 02      6grp_cgc > 14      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 73.9
(-2.8)
A 		67.6
(-3)
A 		100
(-2.1)
A 		292.8
(3)
P 		225
B 95.1
(-1.8)
A 		98.7
(-1.7)
A 		58.6
(-3)
A 		244
(3)
P 		185
C 100.8
(-2.7)
A 		102.4
(-2.6)
A 		89.1
(-3)
P 		306.5
(3)
P 		217
avr 89.9
(-2.8) 		89.6
(-2.8) 		82.6
(-3) 		281.1
(3) 		199

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 126.9
(3)
A 		96.9
(0)
A 		66.4
(-3)
A 		102.3
(0.6)
A 		81.4
(-1.5)
A 		101.2
(0.5)
P 		61
B 194.6
(3)
P 		188.6
(2.7)
P 		78.1
(-2.1)
A 		58
(-3)
A 		60.5
(-2.9)
A 		88.9
(-1.6)
P 		137
C 170
(2.4)
P 		182.9
(3)
P 		55.2
(-2.9)
A 		166.9
(2.3)
A 		53
(-3)
A 		97.6
(-0.9)
P 		130
avr 163.8
(3) 		156.1
(2.5) 		66.6
(-2.9) 		109.1
(-0.3) 		65
(-3) 		95.9
(-1.1) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 26.9
(-0.4)
A 		14.7
(-3)
A 		26.1
(-0.6)
A 		42.9
(3)
P 		28
B 30.3
(-0.4)
A 		24.4
(-1.3)
A 		13.6
(-3)
A 		52
(3)
P 		38
C 33.4
(-1.9)
A 		29.4
(-3)
A 		31.1
(-2.5)
P 		51.7
(3)
P 		22
avr 30.2
(-1.3) 		22.8
(-3) 		23.6
(-2.8) 		48.9
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 23.4
(-0.3)
A 		34.5
(3)
A 		14.5
(-3)
A 		26
(0.5)
A 		24.6
(0)
A 		24.6
(0)
P 		20
B 67.7
(3)
P 		62.8
(2.4)
P 		19
(-2.6)
A 		15.4
(-3)
A 		24.6
(-1.9)
A 		33.2
(-1)
P 		52
C 63
(3)
P 		55.8
(2.1)
P 		14
(-3)
A 		33.6
(-0.6)
A 		17.2
(-2.6)
A 		32.7
(-0.7)
P 		49
avr 51.4
(3) 		51
(2.9) 		15.8
(-3) 		25
(-1.4) 		22.1
(-1.9) 		30.2
(-0.6) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13775
Sequence Type Exemplar sequence
Representative Public ID W07G4.6 NCBI
Target Description W07G4.6 /REP_DB=WormBase Gene ID /WP=CE03792 /TR=Q20338 /GB=CAB01450.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073861
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
W07G4.6 ENSEMBL cdna:known chromosome:CEL140:V:13052358:13056501:-1 gene:W07G4.6 None
SNAP00000022853 ENSEMBL cdna:SNAP chromosome:CEL140:V:13053601:13054810:-1 None
NM_073861 NCBI Caenorhabditis elegans Serpentine Receptor, class R family member (srr-1) (srr-1) mRNA, complete cds. None
GENEFINDER00000022857 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13053806:13054810:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13051834-13054810(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srr-1
Ensembl W07G4.6
Entrez Gene 189285 Entrez gene
SwissProt Q20338 EMBL-EBI
WormBase CE30338 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01450 Hypothetical protein W07G4.6 [Caenorhabditis elegans] emb|CAB01430.2| Hypothetical protein W07G4.6 [Caenorhabditis elegans] ref|NP_506262.2| Serpentine Receptor, class R family member (srr-1) [Caenorhabditis elegans] 0.0
blast CAE64672 Hypothetical protein CBG09447 [Caenorhabditis briggsae] 0.0
blast CAB01450 Hypothetical protein W07G4.6 [Caenorhabditis elegans] emb|CAB01430.2| Hypothetical protein W07G4.6 [Caenorhabditis elegans] ref|NP_506262.2| Serpentine Receptor, class R family member (srr-1) [Caenorhabditis elegans] 1.0E-125
blast CAE64672 Hypothetical protein CBG09447 [Caenorhabditis briggsae] 1.0E-109
blast CAB01450 Hypothetical protein W07G4.6 [Caenorhabditis elegans] emb|CAB01430.2| Hypothetical protein W07G4.6 [Caenorhabditis elegans] ref|NP_506262.2| Serpentine Receptor, class R family member (srr-1) [Caenorhabditis elegans] 4.0E-92
blast CAE64672 Hypothetical protein CBG09447 [Caenorhabditis briggsae] 2.0E-78
blast AAB65304 Serpentine receptor, class r protein 6 [Caenorhabditis elegans] ref|NP_504346.1| Serpentine Receptor, class R family member (srr-6) [Caenorhabditis elegans] 8.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 6.4E-78
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 5.2E-45
Pfam IPR004950 EMBL-EBI Caenorhabditis protein of unknown function DUF267 2.3E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506262.2 6 60-82,97-116,157-179,194-216,270-289,299-321
W07G4.6 6 60-82,97-116,157-179,194-216,270-289,299-321
SNAP00000022853 4 60-82,97-116,157-179,194-216
GENEFINDER00000022857 3 60-82,97-116,153-175
Sequence
Target Sequence 
>C. ELEGANS:178586_AT
actacagtaaacggcactcggatctaattcaactcaccagatttgtgaaccaacaaatga
gcaaatacggttcacttgtaccattatttactttaatttcatttgtaaatgctgcatata
ttgttggaagtttcaaatctgttatggatccagctatatatgttcttctcaatggatgga
ctattgtttgtatgggaattactgttgctggattatcgccaccagcaaaagttcagagta
atatccaggaaaccgctgaaattttaatgcatgacgatgtactgcaaacatgtggagatg
atcaggtatacttgtttattatttattattcactattgaatattcaaatgcatagatttc
tacttttttcaattctttttcttctaattatatcagaagttttctctcaaacaatccctc
caagggagtcagaagtaattgaaatgagtggagatgcaaaaagtgtagttgatttgcttc
aacaaatattagaagccagtcgggcacaaaacattaatcagcaatttcgagtccgaactg
tcgacggaaacattatcttggaatctgtcgactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACAGTAAACGGCACTCGGATCT 125 101 596 Antisense
ACTCGGATCTAATTCAACTCACCAG 339 99 611 Antisense
AATACGGTTCACTTGTACCATTATT 386 171 659 Antisense
GGATCCAGCTATATATGTTCTTCTC 484 513 741 Antisense
GGATTATCGCCACCAGCAAAAGTTC 581 507 805 Antisense
GGAGATGATCAGGTATACTTGTTTA 100 519 889 Antisense
GAAGTTTTCTCTCAAACAATCCCTC 14 337 991 Antisense
TCTCTCAAACAATCCCTCCAAGGGA 517 609 998 Antisense
GCCAGTCGGGCACAAAACATTAATC 316 281 1090 Antisense
AATTTCGAGTCCGAACTGTCGACGG 455 173 1118 Antisense
CATTATCTTGGAATCTGTCGACTAT 7 217 1146 Antisense
Sequence Source Affymetrix Proprietary Database