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[178585_s_at]

Description M151.5 /REP_DB=WormBase Gene ID /WP=CE12442 /TR=O17120 /GB=AAB70376.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.2
(-3)
A 		3.2
(-0.5)
A 		1.7
(-2.4)
A 		6
(3)
A 		5
B 1.3
(-2.5)
A 		1.1
(-3)
A 		3.7
(3)
A 		1.7
(-1.6)
A 		3
C 2.5
(-2.5)
A 		8.6
(3)
A 		1.9
(-3)
A 		7.6
(2.1)
A 		7
avr 1.7
(-3) 		4.3
(1.6) 		2.4
(-1.8) 		5.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.4
(-1.7)
A 		1.5
(-2.8)
A 		17.6
(3)
A 		0.8
(-3)
A 		3.1
(-2.2)
A 		4.5
(-1.7)
A 		17
B 1.6
(-0.8)
A 		2.8
(1.6)
A 		0.9
(-2.2)
A 		1.1
(-1.8)
A 		3.5
(3)
A 		0.5
(-3)
A 		3
C 3.1
(3)
A 		2.3
(0.5)
A 		2.2
(0.2)
A 		1.2
(-3)
A 		1.2
(-3)
A 		2.9
(2.4)
A 		2
avr 3
(-1) 		2.2
(-1.8) 		6.9
(3) 		1
(-3) 		2.6
(-1.4) 		2.6
(-1.4) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 0.5
(-3)
A 		0.7
(-0)
A 		0.5
(-3)
A 		0.9
(3)
A 		0
B 0.4
(-2)
A 		0.3
(-3)
A 		0.9
(3)
A 		0.4
(-2)
A 		1
C 0.8
(-2.7)
A 		2.5
(3)
A 		0.7
(-3)
A 		1.3
(-1)
A 		2
avr 0.6
(-3) 		1.2
(3) 		0.7
(-2) 		0.9
(0) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.8
(-2)
A 		0.6
(-2.3)
A 		3.8
(3)
A 		0.2
(-3)
A 		0.9
(-1.8)
A 		1.1
(-1.5)
A 		4
B 0.6
(-1)
A 		0.9
(0.5)
A 		0.2
(-3)
A 		0.3
(-2.5)
A 		1.4
(3)
A 		0.2
(-3)
A 		1
C 1.2
(3)
A 		0.7
(-0)
A 		0.5
(-1.2)
A 		0.2
(-3)
A 		0.4
(-1.8)
A 		1
(1.8)
A 		1
avr 0.9
(0.2) 		0.7
(-0.7) 		1.5
(3) 		0.2
(-3) 		0.9
(0.2) 		0.8
(-0.2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178585_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4506
Sequence Type Exemplar sequence
Representative Public ID M151.5 NCBI
Target Description M151.5 /REP_DB=WormBase Gene ID /WP=CE12442 /TR=O17120 /GB=AAB70376.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027092(9), NM_062200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027092 NCBI Caenorhabditis elegans M151.8 (M151.8) mRNA, complete cds. 9/11 None
NM_062200 NCBI Caenorhabditis elegans M151.5 (M151.5) mRNA, complete cds. 11/11 None
SNAP00000044219 ENSEMBL cdna:SNAP chromosome:CEL140:II:3637889:3638680:-1 11/11 None
M151.5 ENSEMBL cdna:known chromosome:CEL140:II:3637889:3640291:-1 gene:M151.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_062202 3/11 Cross Hyb Matching Probes None
GENEFINDER00000044225 1/11 Cross Hyb Matching Probes None
GENEFINDER00000044229 2/11 Cross Hyb Matching Probes None
M151.6 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3637887-3640290(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl M151.5
Entrez Gene 187482 Entrez gene
3565241 Entrez gene
SwissProt O17120 EMBL-EBI
WormBase CE12442 Wormbase
CE38623 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494601 M151.5 [Caenorhabditis elegans] gb|AAB70376.1| Hypothetical protein M151.5 [Caenorhabditis elegans] 0.0
blast NP_001022263 M151.8 [Caenorhabditis elegans] gb|AAY43996.1| Hypothetical protein M151.8 [Caenorhabditis elegans] 1.0E-156
blast NP_494601 M151.5 [Caenorhabditis elegans] gb|AAB70376.1| Hypothetical protein M151.5 [Caenorhabditis elegans] 1.0E-142
blast T32302 hypothetical protein M151.6 - Caenorhabditis elegans 1.0E-140
blast NP_001022263 M151.8 [Caenorhabditis elegans] gb|AAY43996.1| Hypothetical protein M151.8 [Caenorhabditis elegans] 1.0E-126
blast T32302 hypothetical protein M151.6 - Caenorhabditis elegans 1.0E-126
blast NP_494603 M151.6 [Caenorhabditis elegans] gb|AAB70377.3| Hypothetical protein M151.6 [Caenorhabditis elegans] 1.0E-125
blast NP_001022263 M151.8 [Caenorhabditis elegans] gb|AAY43996.1| Hypothetical protein M151.8 [Caenorhabditis elegans] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.7E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494601.1 1 7-26
M151.5 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:178585_S_AT
gagtctacagagttaaatgttccgggatttacaatgaaaaaatggatcgagcatatcatt
gatgtgttctctcgcaaggtgcagttaaatatacaagatgcacaagggagaagtattgct
gaagtttatgaacttctaaaacaaatcaatattgtcacattgcacagtgaattgtttgaa
attccaagtcactttatgaaaatgtttccttcgatagaaacacttggtgttttcacagag
tcaatgcctgcctctatctatattcgaaatttgaaaatggtgcgaggaagcaacgtgact
cttaacaatctaataacttcaaattgctcacagttttttctagagaattcacaattttcg
agcaaagatctaaatttctttctgaagcattggctcaggggctcaaacccatatctttta
aatatcgttatgctgttttcggaggctaatgaaaatcgtttggtcgaagctatcattttt
gacggtatcattgattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTCTACAGAGTTAAATGTTCCGG 513 391 766 Antisense
GCATATCATTGATGTGTTCTCTCGC 234 309 816 Antisense
GTGTTCTCTCGCAAGGTGCAGTTAA 379 485 829 Antisense
GGGAGAAGTATTGCTGAAGTTTATG 477 495 871 Antisense
ATCAATATTGTCACATTGCACAGTG 180 27 910 Antisense
CACTTTATGAAAATGTTTCCTTCGA 224 195 955 Antisense
TTCCTTCGATAGAAACACTTGGTGT 216 695 971 Antisense
TGGTGTTTTCACAGAGTCAATGCCT 461 551 990 Antisense
GGTGCGAGGAAGCAACGTGACTCTT 692 501 1044 Antisense
AGGAAGCAACGTGACTCTTAACAAT 287 53 1050 Antisense
CATTTTTGACGGTATCATTGATTAC 587 215 1239 Antisense
Sequence Source Affymetrix Proprietary Database