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[178584_at]

Description F14D7.8 /REP_DB=WormBase Gene ID /WP=CE09386 /TR=Q19450 /GB=CAB01154.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 190
1 2 3 4 range
A 124.2
(-0.3)
P 		72.6
(-2.9)
A 		71.6
(-3)
A 		186.6
(3)
P 		115
B 180.5
(3)
P 		20.3
(-2.7)
A 		10.5
(-3)
A 		123.8
(1)
P 		170
C 200
(3)
P 		84.7
(-3)
A 		93.3
(-2.6)
A 		167.2
(1.3)
M 		115
avr 168.2
(3) 		59.2
(-3) 		58.5
(-3) 		159.2
(2.5) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 171.9
(3)
P 		86.9
(-0.3)
P 		151.8
(2.2)
P 		100
(0.2)
P 		18.2
(-3)
A 		92.3
(-0.1)
A 		154
B 95.9
(0.7)
P 		87.4
(0.2)
M 		132.6
(3)
P 		105
(1.3)
P 		36.2
(-3)
A 		89.5
(0.3)
P 		96
C 114
(0.8)
P 		93.1
(-1.4)
P 		136.2
(3)
P 		82.7
(-2.4)
A 		77
(-3)
A 		129.4
(2.3)
P 		59
avr 127.3
(2.2) 		89.1
(-0.2) 		140.2
(3) 		95.9
(0.2) 		43.8
(-3) 		103.7
(0.7) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 45.2
(3)
P 		15.8
(-3)
A 		18.7
(-2.4)
A 		27.3
(-0.7)
P 		29
B 57.6
(3)
P 		5
(-2.7)
A 		2.4
(-3)
A 		26.4
(-0.4)
P 		55
C 66.2
(3)
P 		24.3
(-3)
A 		32.5
(-1.8)
A 		28.2
(-2.4)
M 		42
avr 56.3
(3) 		15
(-3) 		17.9
(-2.6) 		27.3
(-1.2) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 31.7
(2.7)
P 		30.9
(2.5)
P 		33.1
(3)
P 		25.4
(1.3)
P 		5.5
(-3)
A 		22.5
(0.7)
A 		28
B 33.4
(3)
P 		29.1
(1.6)
M 		32.2
(2.6)
P 		27.8
(1.2)
P 		14.7
(-3)
A 		33.4
(3)
P 		19
C 42.3
(2.8)
P 		28.4
(-0.3)
P 		34.7
(1.1)
P 		16.6
(-3)
A 		24.9
(-1.1)
A 		43.3
(3)
P 		27
avr 35.8
(3) 		29.5
(1.2) 		33.3
(2.3) 		23.3
(-0.6) 		15
(-3) 		33.1
(2.2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12846
Sequence Type Exemplar sequence
Representative Public ID F14D7.8 NCBI
Target Description F14D7.8 /REP_DB=WormBase Gene ID /WP=CE09386 /TR=Q19450 /GB=CAB01154.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074145 NCBI Caenorhabditis elegans F14D7.8 (F14D7.8) mRNA, complete cds. 11/11 None
SNAP00000017364 ENSEMBL cdna:SNAP chromosome:CEL140:V:14314551:14315376:-1 11/11 None
GENEFINDER00000017369 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14314551:14315376:-1 11/11 None
F14D7.8 ENSEMBL cdna:known chromosome:CEL140:V:14314551:14315376:-1 gene:F14D7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14314550-14315376(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14D7.8
Entrez Gene 184468 Entrez gene
SwissProt Q19450 EMBL-EBI
WormBase CE09386 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01154 Hypothetical protein F14D7.8 [Caenorhabditis elegans] ref|NP_506546.1| F14D7.8 [Caenorhabditis elegans] 1.0E-144
blast CAE60937 Hypothetical protein CBG04660 [Caenorhabditis briggsae] 1.0E-30
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506546.1 4 10-32,45-62,72-94,207-229
F14D7.8 4 10-32,45-62,72-94,207-229
SNAP00000017364 4 10-32,45-62,72-94,207-229
GENEFINDER00000017369 4 10-32,45-62,72-94,207-229
Sequence
Target Sequence 
>C. ELEGANS:178584_AT
ttgcatgccattgtcttgttcggtgtgtataacaacactgaacgtagtcttcgctggtcc
gcgaacattgtctacttctacgtcctcttgtactttgccatcttcttggtttttcctgta
atgttggccagttgcaaggcatctggaatcttgccaggaataactgaaggcaaagtgttg
aaaatgatcgacaaggtactcggtagaaacaacgaacccttcggaaatgagactgctgcc
caaatcgacgtccatatcaagcatcaacttttcaaagtgttcggagacgatttcaccaag
aacaaagttaattccatgattctgtgtgatatatccagaaaacaacttttgaaaatgcca
caacactcagacttcaaactaatggaacaaagcagaatttacttggacaactacgcctcc
aaagtcgtctttgagaagattctccaggatgtcagaagagatgatgagtgtatgtatgga
cttatcgctggattaggaatggggctcttctgctacatgctatacggactgatctacctc
gagcacgctatgctcaaacaactttggtccattgctgtgattgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCATGCCATTGTCTTGTTCGGTG 103 703 160 Antisense
ACACTGAACGTAGTCTTCGCTGGTC 80 107 194 Antisense
GTCCGCGAACATTGTCTACTTCTAC 127 477 216 Antisense
GCCATCTTCTTGGTTTTTCCTGTAA 120 281 256 Antisense
AAATGAGACTGCTGCCCAAATCGAC 471 119 384 Antisense
ATCGACGTCCATATCAAGCATCAAC 70 37 403 Antisense
AAATGCCACAACACTCAGACTTCAA 368 119 512 Antisense
GAATTTACTTGGACAACTACGCCTC 140 325 554 Antisense
GCTCTTCTGCTACATGCTATACGGA 319 301 663 Antisense
CTATACGGACTGATCTACCTCGAGC 96 225 679 Antisense
ACTTTGGTCCATTGCTGTGATTGTC 258 101 720 Antisense
Sequence Source Affymetrix Proprietary Database