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[178583_at]

Description K08D8.2 /REP_DB=WormBase Gene ID /WP=CE21041 /TR=Q21328 /GB=CAA97433.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 42
(-0.8)
A 		11.3
(-2.8)
A 		8.1
(-3)
A 		99.6
(3)
A 		92
B 6.7
(-2.9)
A 		61.6
(3)
A 		32.5
(-0.1)
A 		5.4
(-3)
A 		56
C 30
(-1.6)
A 		23.4
(-3)
A 		42.4
(1)
A 		52.1
(3)
A 		29
avr 26.2
(-3) 		32.1
(-1.6) 		27.7
(-2.7) 		52.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 75.7
(3)
A 		19.9
(-1.5)
A 		41.2
(0.2)
A 		33.2
(-0.5)
A 		25.4
(-1.1)
A 		1.8
(-3)
A 		74
B 63.7
(3)
A 		62.6
(2.9)
A 		55.5
(2)
A 		17.4
(-2.9)
A 		16.7
(-3)
A 		27.9
(-1.6)
A 		47
C 23.4
(-3)
A 		31.1
(-0.2)
A 		29
(-1)
A 		30.2
(-0.5)
A 		25.9
(-2.1)
A 		39.9
(3)
A 		17
avr 54.3
(3) 		37.9
(-0.1) 		41.9
(0.6) 		26.9
(-2.2) 		22.7
(-3) 		23.2
(-2.9) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.3
(3)
A 		2.5
(-2.8)
A 		2.1
(-3)
A 		14.6
(2.7)
A 		13
B 2.2
(-2.6)
A 		15.2
(3)
A 		7.5
(-0.3)
A 		1.2
(-3)
A 		14
C 9.9
(-0.6)
A 		6.7
(-3)
A 		14.8
(3)
A 		8.8
(-1.4)
A 		8
avr 9.1
(3) 		8.1
(-3) 		8.1
(-3) 		8.2
(-2.4) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 14
(3)
A 		7.1
(-0)
A 		9
(0.8)
A 		8.4
(0.5)
A 		7.7
(0.2)
A 		0.4
(-3)
A 		14
B 22.1
(3)
A 		20.8
(2.6)
A 		13.5
(0.1)
A 		4.6
(-3)
A 		6.8
(-2.2)
A 		10.4
(-1)
A 		18
C 8.7
(-0.8)
A 		9.5
(-0.2)
A 		7.4
(-1.9)
A 		6.1
(-3)
A 		8.4
(-1.1)
A 		13.3
(3)
A 		7
avr 14.9
(3) 		12.5
(1.3) 		10
(-0.5) 		6.4
(-3) 		7.6
(-2.2) 		8
(-1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178583_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8998
Sequence Type Exemplar sequence
Representative Public ID K08D8.2 NCBI
Target Description K08D8.2 /REP_DB=WormBase Gene ID /WP=CE21041 /TR=Q21328 /GB=CAA97433.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070058 NCBI Caenorhabditis elegans K08D8.2 (K08D8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000040297 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12903087:12903732:1 11/11 None
K08D8.2 ENSEMBL cdna:known chromosome:CEL140:IV:12903087:12903732:1 gene:K08D8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040290 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12903092-12903738(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D8.2
Entrez Gene 187143 Entrez gene
SwissProt Q21328 EMBL-EBI
WormBase CE21041 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97433 Hypothetical protein K08D8.2 [Caenorhabditis elegans] ref|NP_502459.1| K08D8.2 [Caenorhabditis elegans] 1.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502459.1 1 79-101
K08D8.2 1 79-101
GENEFINDER00000040297 1 79-101
Sequence
Target Sequence 
>C. ELEGANS:178583_AT
tggaagccccaatttctagtgctccacctgcttatactgaagttgctctgccggcctata
cggtagcatctggaaccgctgctggcagtcagatggcaccgtccagggtacatgtaactg
aacgaattatatacacagattttagtaatcaaaggattccacgaaaaaatcaacaggtac
caagatcccaacggaatagcaactgttggtgcattgcttgcatatgcatactcataatat
ttctttttattatcagtatagtttttgctacccaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAAGCCCCAATTTCTAGTGCTCC 268 547 44 Antisense
TGCTCCACCTGCTTATACTGAAGTT 76 583 63 Antisense
TCTGCCGGCCTATACGGTAGCATCT 399 597 90 Antisense
TCTGGAACCGCTGCTGGCAGTCAGA 587 605 112 Antisense
CTGGCAGTCAGATGGCACCGTCCAG 537 239 125 Antisense
GGCACCGTCCAGGGTACATGTAACT 482 535 138 Antisense
TCAACAGGTACCAAGATCCCAACGG 435 629 213 Antisense
AGATCCCAACGGAATAGCAACTGTT 178 67 226 Antisense
GCAACTGTTGGTGCATTGCTTGCAT 55 321 242 Antisense
GCATTGCTTGCATATGCATACTCAT 638 307 254 Antisense
TCAGTATAGTTTTTGCTACCCAAGC 418 621 296 Antisense
Sequence Source Affymetrix Proprietary Database