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[178582_at]

Description C47F8.7 /REP_DB=WormBase Gene ID /WP=CE17576 /TR=O62110 /GB=CAA15834.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      6grp_total > 33      4grp_total > 43      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 76.9
(-3)
M 		127.8
(3)
A 		79.1
(-2.7)
M 		114
(1.4)
A 		51
B 69.8
(0.1)
A 		77.9
(1.1)
A 		93.3
(3)
A 		44.8
(-3)
A 		49
C 87.7
(3)
A 		64.4
(-3)
M 		67.5
(-2.2)
A 		84.7
(2.2)
A 		23
avr 78.1
(-3) 		90
(3) 		80
(-2) 		81.2
(-1.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 206.9
(3)
P 		120.6
(-0.3)
P 		194.7
(2.5)
P 		132.2
(0.2)
P 		80.9
(-1.8)
P 		49.5
(-3)
P 		157
B 245.9
(3)
P 		129.3
(-0.7)
P 		147.9
(-0.1)
P 		94
(-1.8)
P 		76.2
(-2.3)
P 		54.7
(-3)
P 		191
C 201.7
(3)
P 		166.3
(1.4)
P 		145.9
(0.5)
P 		89.8
(-2)
P 		73.4
(-2.7)
M 		67
(-3)
P 		135
avr 218.2
(3) 		138.7
(0) 		162.8
(0.9) 		105.3
(-1.2) 		76.8
(-2.3) 		57.1
(-3) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 28
(3)
M 		27.7
(2.8)
A 		20.7
(-0.9)
M 		16.7
(-3)
A 		11
B 22.3
(3)
A 		19.2
(1.5)
A 		21.6
(2.7)
A 		9.6
(-3)
A 		13
C 29
(3)
A 		18.5
(-1.3)
M 		23.5
(0.8)
A 		14.3
(-3)
A 		15
avr 26.4
(3) 		21.8
(0.9) 		21.9
(0.9) 		13.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 38.1
(2.1)
P 		42.9
(3)
P 		42.4
(2.9)
P 		33.5
(1.2)
P 		24.4
(-0.6)
P 		12
(-3)
P 		31
B 85.6
(3)
P 		43
(-0.9)
P 		35.9
(-1.6)
P 		24.9
(-2.6)
P 		31
(-2)
P 		20.4
(-3)
P 		65
C 74.8
(3)
P 		50.7
(0.4)
P 		37.1
(-1)
P 		18.1
(-3)
P 		23.7
(-2.4)
M 		22.4
(-2.5)
P 		57
avr 66.2
(3) 		45.5
(0.4) 		38.5
(-0.5) 		25.5
(-2.1) 		26.4
(-2) 		18.3
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.858
Sequence Type Exemplar sequence
Representative Public ID C47F8.7 NCBI
Target Description C47F8.7 /REP_DB=WormBase Gene ID /WP=CE17576 /TR=O62110 /GB=CAA15834.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060716 NCBI Caenorhabditis elegans C47F8.7 (C47F8.7) mRNA, complete cds. 11/11 None
SNAP00000020212 ENSEMBL cdna:SNAP chromosome:CEL140:I:12334572:12335132:-1 11/11 None
GENEFINDER00000020219 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12334572:12335132:-1 11/11 None
C47F8.7 ENSEMBL cdna:known chromosome:CEL140:I:12334572:12335132:-1 gene:C47F8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12334502-12335063(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47F8.7
Entrez Gene 183563 Entrez gene
SwissProt O62110 EMBL-EBI
WormBase CE17576 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15834 Hypothetical protein C47F8.7 [Caenorhabditis elegans] ref|NP_493117.1| C47F8.7 [Caenorhabditis elegans] 4.0E-85
Sequence
Target Sequence 
>C. ELEGANS:178582_AT
cctccagctacactttttttgctcatttcaattgcagtttggcacgtccaatgtcaaccc
cgttgtcctggatttgttaataaaaccgctgacgactatctgaaatgcaaagcttcgaac
aaagttattctcgcagtttccaacaaaagcgacgcaccaatctacgaaacgtttactata
aaatcttattacgaatcggaaactccattcagcgatgacgatatgaataatcttccggaa
aaggttgctacaagtgccgtcacttcagttcttcctgagcacacgtctgaaaaaaatatt
acgcgtctcgtcaaacaagccctgcgtgagggttatggggaattcatcgaaattgccgag
attcccaagcactcaagaagaactgtctttcagcttgtcgtcatttgcaaaactatccgt
ttccactttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTCCAGCTACACTTTTTTTGCTCA 79 267 19 Antisense
AGTTTGGCACGTCCAATGTCAACCC 362 63 54 Antisense
ATAAAACCGCTGACGACTATCTGAA 114 25 98 Antisense
AAGCGACGCACCAATCTACGAAACG 562 149 165 Antisense
GGAAACTCCATTCAGCGATGACGAT 455 527 216 Antisense
AAAGGTTGCTACAAGTGCCGTCACT 576 121 258 Antisense
ACTTCAGTTCTTCCTGAGCACACGT 575 103 280 Antisense
TATTACGCGTCTCGTCAAACAAGCC 164 657 315 Antisense
AAATTGCCGAGATTCCCAAGCACTC 572 115 368 Antisense
GTCTTTCAGCTTGTCGTCATTTGCA 668 467 403 Antisense
TGCAAAACTATCCGTTTCCACTTTT 40 577 424 Antisense
Sequence Source Affymetrix Proprietary Database