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[178581_at]

Description T06E6.8 /REP_DB=WormBase Gene ID /WP=CE16367 /TR=O45762 /GB=CAB03317.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 01      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 22.8
(-1.2)
A 		6
(-3)
A 		12.5
(-2.3)
A 		63.5
(3)
A 		58
B 18.3
(-0)
A 		6
(-3)
A 		28.2
(2.3)
A 		31
(3)
A 		25
C 4.7
(-3)
A 		21.4
(-1.4)
A 		22.9
(-1.2)
A 		66.2
(3)
A 		62
avr 15.3
(-2.4) 		11.1
(-3) 		21.2
(-1.6) 		53.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 11
(-0.9)
A 		5.3
(-2.4)
A 		25.8
(3)
A 		19.3
(1.3)
A 		3.1
(-3)
A 		5
(-2.5)
A 		23
B 25
(1.3)
A 		25
(1.3)
A 		10.9
(-3)
A 		30.6
(3)
A 		27.3
(2)
A 		16.4
(-1.3)
A 		20
C 3.6
(-2.7)
A 		34.3
(3)
A 		4.4
(-2.5)
A 		3.4
(-2.7)
A 		2.2
(-2.9)
A 		1.8
(-3)
A 		33
avr 13.2
(-0.6) 		21.5
(3) 		13.7
(-0.4) 		17.8
(1.4) 		10.9
(-1.6) 		7.7
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.3
(2.3)
A 		1.3
(-3)
A 		3.3
(-1.5)
A 		9.3
(3)
A 		8
B 5.8
(2.1)
A 		1.5
(-3)
A 		6.5
(2.9)
A 		6.6
(3)
A 		5
C 1.6
(-3)
A 		6.1
(-0.2)
A 		8
(1)
A 		11.2
(3)
A 		10
avr 5.2
(-0.8) 		3
(-3) 		5.9
(-0.1) 		9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2
(-1.6)
A 		1.9
(-1.7)
A 		5.6
(3)
A 		4.9
(2.1)
A 		0.9
(-3)
A 		1.2
(-2.6)
A 		5
B 8.7
(1.3)
A 		8.3
(1)
A 		2.6
(-3)
A 		8.1
(0.9)
A 		11.1
(3)
A 		6.1
(-0.5)
A 		9
C 1.3
(-2.6)
A 		10.5
(3)
A 		1.1
(-2.7)
A 		0.7
(-2.9)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		10
avr 4
(-1) 		6.9
(3) 		3.1
(-2.3) 		4.6
(-0.2) 		4.2
(-0.8) 		2.6
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13218
Sequence Type Exemplar sequence
Representative Public ID T06E6.8 NCBI
Target Description T06E6.8 /REP_DB=WormBase Gene ID /WP=CE16367 /TR=O45762 /GB=CAB03317.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074432(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074432 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-264) (srh-264) mRNA, complete cds. 9/11 None
T06E6.8 ENSEMBL cdna:known chromosome:CEL140:V:15416733:15417935:1 gene:T06E6.8 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027745 6/11 Cross Hyb Matching Probes None
GENEFINDER00000027751 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15416732-15417935(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-264
Ensembl T06E6.8
Entrez Gene 188187 Entrez gene
SwissProt O45762 EMBL-EBI
WormBase CE13327 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03317 Hypothetical protein T06E6.8 [Caenorhabditis elegans] ref|NP_506833.2| Serpentine Receptor, class H family member (srh-264) [Caenorhabditis elegans] 0.0
blast CAB03318 Hypothetical protein T06E6.9 [Caenorhabditis elegans] ref|NP_506834.1| Serpentine Receptor, class H family member (srh-265) [Caenorhabditis elegans] 1.0E-158
blast CAB04559 Hypothetical protein K03D7.4 [Caenorhabditis elegans] ref|NP_507434.1| Serpentine Receptor, class H family member (srh-261) [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506833.2 7 10-32,52-74,94-112,133-150,187-209,235-257,272-292
T06E6.8 7 10-32,52-74,94-112,133-150,187-209,235-257,272-292
Sequence
Target Sequence 
>C. ELEGANS:178581_AT
gactataacgggcggtcaagttccaaatctacctgtcgaactcagatccatgaacctttc
aatctgggcaacagattatcgactctttctgggatctttcatctttatcacatccttcca
actaatggaatttattcctctgattttaataaccgactggaatgtccgaacatcaatcaa
gaaatcaacgcagtcacggcaaacaatgcagctccaattaaagttcttattggctcttta
tgcacagagcggcgcattcttcctgacctgcttcactccttacgtatacattttgtactc
ctgctttacaaactattacaaccccattgcaaacaactttatattcattttcgtagcatc
acgtggatcaatatcgacaataattttgctatcagcatataaaccttacaaaaaggatgt
ggtcaataaatttcagttacttggtacctcgctcggttgcttgaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATAACGGGCGGTCAAGTTCCA 424 191 549 Antisense
GTCAAGTTCCAAATCTACCTGTCGA 417 463 563 Antisense
TCTACCTGTCGAACTCAGATCCATG 79 615 576 Antisense
ATGAACCTTTCAATCTGGGCAACAG 698 43 598 Antisense
TTATCGACTCTTTCTGGGATCTTTC 342 681 624 Antisense
GATCTTTCATCTTTATCACATCCTT 687 419 641 Antisense
TGCTTCACTCCTTACGTATACATTT 395 579 817 Antisense
GTACTCCTGCTTTACAAACTATTAC 370 459 843 Antisense
TTTATATTCATTTTCGTAGCATCAC 699 673 886 Antisense
ATTTCAGTTACTTGGTACCTCGCTC 576 15 978 Antisense
GTACCTCGCTCGGTTGCTTGAAAAA 592 457 992 Antisense
Sequence Source Affymetrix Proprietary Database