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[178580_at]

Description C25F9.8 /REP_DB=WormBase Gene ID /WP=CE17472 /TR=O62072 /GB=CAB03916.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 36      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.1
(2.5)
A 		4.7
(-3)
A 		7.2
(0.1)
A 		9.5
(3)
A 		5
B 6.3
(-0.1)
A 		11.1
(3)
A 		5.3
(-0.8)
A 		1.9
(-3)
A 		9
C 5.7
(-1.6)
A 		10.9
(3)
A 		4.1
(-3)
A 		9.9
(2.1)
A 		7
avr 7
(-0.4) 		8.9
(3) 		5.5
(-3) 		7.1
(-0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 27.6
(3)
A 		1.4
(-3)
A 		2.8
(-2.7)
A 		6.6
(-1.8)
A 		4.6
(-2.3)
A 		3.5
(-2.5)
A 		26
B 2.7
(-0.4)
A 		3.9
(1.6)
A 		4.7
(3)
A 		4.1
(2)
A 		3.8
(1.5)
A 		1.2
(-3)
A 		4
C 3
(-1.4)
A 		5.1
(1.4)
A 		6.3
(3)
A 		2.2
(-2.5)
A 		2.6
(-1.9)
A 		1.8
(-3)
A 		5
avr 11.1
(3) 		3.5
(-2.1) 		4.6
(-1.4) 		4.3
(-1.6) 		3.7
(-2) 		2.2
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 3.3
(3)
A 		1
(-3)
A 		1.9
(-0.7)
A 		1.4
(-2)
A 		2
B 2
(1)
A 		2.8
(3)
A 		1.2
(-1)
A 		0.4
(-3)
A 		2
C 1.9
(-1.2)
A 		3.1
(3)
A 		1.4
(-3)
A 		1.7
(-1.9)
A 		2
avr 2.4
(3) 		2.3
(2.5) 		1.5
(-1.5) 		1.2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 5.1
(3)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		1.7
(-1.4)
A 		1.4
(-1.8)
A 		0.9
(-2.5)
A 		5
B 1
(0)
A 		1.3
(1.8)
A 		1.1
(0.6)
A 		1.1
(0.6)
A 		1.5
(3)
A 		0.5
(-3)
A 		1
C 1.1
(0.5)
A 		1.6
(3)
A 		1.6
(3)
A 		0.4
(-3)
A 		0.8
(-1)
A 		0.6
(-2)
A 		1
avr 2.4
(3) 		1.1
(-1.6) 		1.1
(-1.6) 		1.1
(-1.6) 		1.2
(-1.2) 		0.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178580_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13383
Sequence Type Exemplar sequence
Representative Public ID C25F9.8 NCBI
Target Description C25F9.8 /REP_DB=WormBase Gene ID /WP=CE17472 /TR=O62072 /GB=CAB03916.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075373 NCBI Caenorhabditis elegans C25F9.8 (C25F9.8) mRNA, complete cds. 11/11 None
SNAP00000028310 ENSEMBL cdna:SNAP chromosome:CEL140:V:19397628:19400822:1 11/11 None
GENEFINDER00000028324 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19397628:19398860:1 11/11 None
C25F9.8 ENSEMBL cdna:known chromosome:CEL140:V:19397628:19398752:1 gene:C25F9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19397627-19398752(+) 99.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25F9.8
Entrez Gene 182907 Entrez gene
SwissProt O62072 EMBL-EBI
WormBase CE17472 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03916 Hypothetical protein C25F9.8 [Caenorhabditis elegans] ref|NP_507774.1| C25F9.8 [Caenorhabditis elegans] 0.0
blast CAB04208 Hypothetical protein F28B1.1 [Caenorhabditis elegans] ref|NP_507316.1| F28B1.1 [Caenorhabditis elegans] 6.0E-83
blast CAB04208 Hypothetical protein F28B1.1 [Caenorhabditis elegans] ref|NP_507316.1| F28B1.1 [Caenorhabditis elegans] 2.0E-81
blast CAB04208 Hypothetical protein F28B1.1 [Caenorhabditis elegans] ref|NP_507316.1| F28B1.1 [Caenorhabditis elegans] 6.0E-81
blast CAB04209 Hypothetical protein F28B1.2 [Caenorhabditis elegans] ref|NP_507317.1| F28B1.2 [Caenorhabditis elegans] 3.0E-75
blast CAB04209 Hypothetical protein F28B1.2 [Caenorhabditis elegans] ref|NP_507317.1| F28B1.2 [Caenorhabditis elegans] 2.0E-74
Sequence
Target Sequence 
>C. ELEGANS:178580_AT
tcgacatgctgcatttgcctgtgtcgctgattcgaacagctgtgcttgcccgcaaatcgc
atacaaagcattagatgtgctcatcgagaacctaataccatcggccagtgaccagtgtgg
ttttctgagagcatcatgcccgaacaaagatgaagttccatatttgcgcagtcctcacac
acttccaatacaaagtggaaacggcagacatgtgtgggtatcagattggcgtcgtttcga
agatctactatgcgtgaagaatggcacaacttttgactggtatttcgggaatttgaagct
ggaagggcagataacggtggagtgtgattctaatagagcaattttccaagctgatgcagc
cgcgccatgtggagtcttcaaagatattgaacacatagacgacttgtaccaaaataaaat
aggatattttgccgacgcggaattcggtataaattattggataccgagcgatgaatttga
aatgaaatgtgacgatgggtatcgcccagttgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGACATGCTGCATTTGCCTGTGTC 530 601 450 Antisense
TGATTCGAACAGCTGTGCTTGCCCG 9 565 477 Antisense
TGCTTGCCCGCAAATCGCATACAAA 140 579 492 Antisense
GTGCTCATCGAGAACCTAATACCAT 669 479 526 Antisense
CTAATACCATCGGCCAGTGACCAGT 277 227 541 Antisense
GTGGTTTTCTGAGAGCATCATGCCC 590 489 566 Antisense
TGAAGTTCCATATTTGCGCAGTCCT 501 575 600 Antisense
TGGGTATCAGATTGGCGTCGTTTCG 448 553 664 Antisense
GCGTCGTTTCGAAGATCTACTATGC 668 291 678 Antisense
CGCGCCATGTGGAGTCTTCAAAGAT 246 257 810 Antisense
GACGATGGGTATCGCCCAGTTGTGT 50 379 940 Antisense
Sequence Source Affymetrix Proprietary Database