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[178579_at]

Description F33E2.6 /REP_DB=WormBase Gene ID /WP=CE09907 /TR=O01699 /GB=CAB06541.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 1.2
(-3)
A 		2.2
(-2.9)
A 		5.1
(-2.6)
A 		62
(3)
A 		61
B 17.4
(3)
A 		3.6
(-3)
A 		7.7
(-1.2)
A 		5.9
(-2)
A 		14
C 6.3
(-2.2)
A 		4.2
(-2.6)
A 		2.2
(-3)
A 		33.7
(3)
A 		32
avr 8.3
(-2) 		3.3
(-3) 		5
(-2.7) 		33.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.4
(-2.6)
A 		40.4
(3)
A 		18.8
(-0.3)
A 		2.7
(-2.8)
A 		1.6
(-3)
A 		29.8
(1.4)
A 		39
B 27.6
(2.1)
A 		5.9
(-2.3)
A 		2.5
(-3)
A 		32.2
(3)
A 		3.3
(-2.8)
A 		3.6
(-2.8)
A 		30
C 24
(3)
A 		7
(-1.9)
A 		3.1
(-3)
A 		7
(-1.9)
A 		4.5
(-2.6)
A 		5
(-2.5)
A 		21
avr 18.7
(3) 		17.8
(2.7) 		8.1
(-1.1) 		14
(1.2) 		3.1
(-3) 		12.8
(0.7) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.4
(-3)
A 		0.5
(-2.9)
A 		1.3
(-2.4)
A 		9.1
(3)
A 		9
B 5.5
(3)
A 		0.9
(-3)
A 		1.8
(-1.8)
A 		1.2
(-2.6)
A 		5
C 2.1
(-1.4)
A 		1.2
(-2.5)
A 		0.8
(-3)
A 		5.7
(3)
A 		5
avr 2.7
(-0.5) 		0.9
(-3) 		1.3
(-2.5) 		5.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		14.4
(3)
A 		4.1
(-1.4)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		7.2
(-0.1)
A 		14
B 9.6
(3)
A 		2
(-2.1)
A 		0.6
(-3)
A 		8.5
(2.3)
A 		1.3
(-2.5)
A 		1.4
(-2.5)
A 		9
C 8.9
(3)
A 		2.1
(-2)
A 		0.8
(-3)
A 		1.4
(-2.6)
A 		1.5
(-2.5)
A 		1.7
(-2.3)
A 		8
avr 6.4
(3) 		6.2
(2.8) 		1.8
(-2.2) 		3.5
(-0.3) 		1.1
(-3) 		3.4
(-0.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2234
Sequence Type Exemplar sequence
Representative Public ID F33E2.6 NCBI
Target Description F33E2.6 /REP_DB=WormBase Gene ID /WP=CE09907 /TR=O01699 /GB=CAB06541.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060789(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060789 NCBI Caenorhabditis elegans F33E2.6 (F33E2.6) mRNA, complete cds. 11/11 None
SNAP00000035924 ENSEMBL cdna:SNAP chromosome:CEL140:I:12595273:12599212:1 11/11 None
GENEFINDER00000035927 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12595501:12599212:1 11/11 None
F33E2.6 ENSEMBL cdna:known chromosome:CEL140:I:12595627:12599212:1 gene:F33E2.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12595557-12599143(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33E2.6
Entrez Gene 185235 Entrez gene
SwissProt O01699 EMBL-EBI
WormBase CE09907 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB06541 Hypothetical protein F33E2.6 [Caenorhabditis elegans] ref|NP_493190.1| F33E2.6 [Caenorhabditis elegans] 1.0E-179
blast CAB06541 Hypothetical protein F33E2.6 [Caenorhabditis elegans] ref|NP_493190.1| F33E2.6 [Caenorhabditis elegans] 1.0E-173
blast CAB06541 Hypothetical protein F33E2.6 [Caenorhabditis elegans] ref|NP_493190.1| F33E2.6 [Caenorhabditis elegans] 1.0E-162
blast AAP74661 elicitor-like transglutaminase M81 [Phytophthora infestans] gb|AAN37688.1| elicitor-like mating protein M81 [Phytophthora infestans] 3.0E-25
blast AAS54628 AGR138Wp [Ashbya gossypii ATCC 10895] ref|NP_986804.1| AGR138Wp [Eremothecium gossypii] 9.0E-16
Sequence
Target Sequence 
>C. ELEGANS:178579_AT
cgccaaagaccgaagctccaatgactgaagtaccaatgactggaccttccaggactgaag
taccaatgactgaaccaccaaagactgaacaaccaaggacggcgccaccaagaactgaag
tatcaatgactttaccaccagagactgtacctccaaagactgaagctccaaggactgaag
taccaatgactggaccttccaggactgaagtaccaatgactgtaactccagagactggac
tttcaagcactgtaacttcaaagactgaaccaccaaagactacgactgaaaagagaataa
ctccaaggacagaagtgccaaagacggttcctccgcggactgggccaccaatgactgtac
ctcctgggactgaagcaccgacgactgaagcaccaatgactataactccaaggactgaac
aactaaggactgaacaactaaggactgatcaatcaaagactgtaactccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCAAAGACCGAAGCTCCAATGAC 428 257 2036 Antisense
AAGTACCAATGACTGAACCACCAAA 333 155 2093 Antisense
CAAAGACTGAAGCTCCAAGGACTGA 199 189 2189 Antisense
GTACCAATGACTGTAACTCCAGAGA 327 455 2245 Antisense
GAGACTGGACTTTCAAGCACTGTAA 535 391 2266 Antisense
GAACCACCAAAGACTACGACTGAAA 479 343 2302 Antisense
CAGAAGTGCCAAAGACGGTTCCTCC 72 203 2345 Antisense
TGACTGTACCTCCTGGGACTGAAGC 527 427 2387 Antisense
TGAAGCACCGACGACTGAAGCACCA 578 573 2406 Antisense
GAAGCACCAATGACTATAACTCCAA 486 339 2422 Antisense
GATCAATCAAAGACTGTAACTCCAA 308 421 2482 Antisense
Sequence Source Affymetrix Proprietary Database