[Home] | [Total List]

[178577_at]

Description C49F8.1 /REP_DB=WormBase Gene ID /WP=CE05456 /TR=Q18710 /GB=CAA94124.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 3.6
(-3)
A 		184.8
(2.9)
P 		187.1
(3)
P 		90
(-0.2)
A 		184
B 61.1
(-1.9)
A 		196.9
(2.9)
P 		198.6
(3)
P 		28.5
(-3)
A 		170
C 19.4
(-3)
A 		195.5
(3)
P 		129.5
(0.8)
P 		54.2
(-1.8)
A 		176
avr 28
(-3) 		192.4
(3) 		171.7
(2.2) 		57.6
(-1.9) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 52
(-3)
A 		117.2
(-1.2)
M 		88.5
(-2)
A 		171.8
(0.2)
P 		274.2
(3)
P 		185.5
(0.6)
P 		222
B 35.7
(-3)
A 		111
(-0.5)
P 		84.6
(-1.4)
A 		154.6
(1)
P 		215.8
(3)
P 		179.6
(1.8)
P 		180
C 60
(-3)
A 		82.3
(-2.3)
A 		142.1
(-0.6)
P 		238.8
(2.3)
P 		262.1
(3)
P 		171.6
(0.3)
P 		202
avr 49.2
(-3) 		103.5
(-1.4) 		105.1
(-1.3) 		188.4
(1.1) 		250.7
(3) 		178.9
(0.9) 		202
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 1.3
(-3)
A 		40.1
(1.9)
P 		48.9
(3)
P 		13.2
(-1.5)
A 		48
B 19.5
(-1.1)
A 		48.6
(3)
P 		46
(2.6)
P 		6.1
(-3)
A 		43
C 6.4
(-3)
A 		56.2
(3)
P 		45.2
(1.7)
P 		9.1
(-2.7)
A 		50
avr 9.1
(-3) 		48.3
(3) 		46.7
(2.8) 		9.5
(-2.9) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 9.6
(-3)
A 		41.7
(-0.4)
M 		19.3
(-2.2)
A 		43.6
(-0.2)
P 		82.7
(3)
P 		45.2
(-0.1)
P 		73
B 12.4
(-3)
A 		36.9
(-1)
P 		20.5
(-2.4)
A 		41
(-0.7)
P 		87.7
(3)
P 		67
(1.4)
P 		75
C 22.2
(-3)
A 		25.1
(-2.7)
A 		36.2
(-1.7)
P 		48
(-0.5)
P 		84.8
(3)
P 		57.4
(0.4)
P 		63
avr 14.7
(-3) 		34.6
(-1.3) 		25.3
(-2.1) 		44.2
(-0.5) 		85.1
(3) 		56.5
(0.6) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178577_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17330
Sequence Type Exemplar sequence
Representative Public ID C49F8.1 NCBI
Target Description C49F8.1 /REP_DB=WormBase Gene ID /WP=CE05456 /TR=Q18710 /GB=CAA94124.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077823 NCBI Caenorhabditis elegans C49F8.1 (C49F8.1) mRNA, complete cds. 11/11 None
SNAP00000013055 ENSEMBL cdna:SNAP chromosome:CEL140:X:13361232:13362417:-1 11/11 None
GENEFINDER00000013061 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13361232:13362417:-1 11/11 None
C49F8.1 ENSEMBL cdna:known chromosome:CEL140:X:13361232:13365214:-1 gene:C49F8.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13361231-13365214(-) 92.89 100.0
Public Domain and Genome References
Gene Title
Ensembl C49F8.1
Entrez Gene 183617 Entrez gene
SwissProt Q18710 EMBL-EBI
WormBase CE05456 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94124 Hypothetical protein C49F8.1 [Caenorhabditis elegans] ref|NP_510224.1| C49F8.1 [Caenorhabditis elegans] 0.0
blast CAA94124 Hypothetical protein C49F8.1 [Caenorhabditis elegans] ref|NP_510224.1| C49F8.1 [Caenorhabditis elegans] 8.0E-84
blast CAE63371 Hypothetical protein CBG07783 [Caenorhabditis briggsae] 2.0E-64
blast CAE63371 Hypothetical protein CBG07783 [Caenorhabditis briggsae] 3.0E-63
blast CAE63372 Hypothetical protein CBG07784 [Caenorhabditis briggsae] 5.0E-35
Sequence
Target Sequence 
>C. ELEGANS:178577_AT
gtttcatacctggcttttgttgcggccttcccaacaagtaatcaacaacagtacactcaa
accgcccagcaatatcctgctcagcaggagatcaagccatcacagacggttcctcaatta
tcggctcaccacggatatgtatacggacctcaacaagccatgccccaactttcacaatat
ccttctccatcaacagctgcacctgctccagttccggagcaaccaaccctcaataatttg
ccattagaagtaaaacaaagtgcacagaccctctttaacgatcctgactttcaaatgctg
gccagaagccttcagtctggaactggaagcagtggatacagtaatccgctatccgcccgc
gacattcctccgtgctcttccgacggccgctctgtgaccatcgatcatctcagaatctct
ccagaatcacttgtccaaattgctcgtcttgctcaagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTCATACCTGGCTTTTGTTGCGG 123 451 667 Antisense
GATCAAGCCATCACAGACGGTTCCT 223 421 756 Antisense
CAGACGGTTCCTCAATTATCGGCTC 114 205 769 Antisense
GTATACGGACCTCAACAAGCCATGC 671 451 805 Antisense
ACAGACCCTCTTTAACGATCCTGAC 315 91 930 Antisense
CGATCCTGACTTTCAAATGCTGGCC 325 249 945 Antisense
AATGCTGGCCAGAAGCCTTCAGTCT 492 165 960 Antisense
GGATACAGTAATCCGCTATCCGCCC 183 511 1000 Antisense
ATCGATCATCTCAGAATCTCTCCAG 24 37 1066 Antisense
ATCTCTCCAGAATCACTTGTCCAAA 365 33 1081 Antisense
CCAAATTGCTCGTCTTGCTCAAGCG 40 277 1101 Antisense
Sequence Source Affymetrix Proprietary Database