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[178576_at]

Description K08G2.6 /REP_DB=WormBase Gene ID /WP=CE11966 /TR=Q93868 /GB=CAB03193.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 01      6grp_cgc > 64      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 20.7
(-3)
A 		23.7
(3)
A 		23.7
(3)
A 		21.5
(-1.4)
A 		3
B 11.8
(-2.2)
A 		7.9
(-3)
A 		38.8
(3)
A 		22.1
(-0.2)
A 		31
C 52.2
(-1.1)
A 		22.7
(-3)
A 		23.1
(-3)
A 		115.8
(3)
A 		93
avr 28.2
(-1.3) 		18.1
(-3) 		28.5
(-1.2) 		53.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 28.1
(-1.3)
A 		27.4
(-1.4)
A 		46.9
(0.4)
M 		30.7
(-1.1)
A 		75.5
(3)
A 		9.9
(-3)
A 		66
B 5.4
(-2)
A 		12.7
(-0.1)
A 		24.4
(3)
A 		11.2
(-0.5)
A 		13.5
(0.1)
A 		1.6
(-3)
A 		23
C 18.8
(-1.3)
A 		46.9
(2.6)
A 		7.6
(-2.8)
A 		8.4
(-2.7)
A 		6.3
(-3)
A 		50.1
(3)
A 		44
avr 17.4
(-2.8) 		29
(1.9) 		26.3
(0.8) 		16.8
(-3) 		31.8
(3) 		20.5
(-1.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 7.5
(3)
A 		5.1
(-0.3)
A 		6.2
(1.2)
A 		3.1
(-3)
A 		4
B 3.7
(-1.5)
A 		1.9
(-3)
A 		9
(3)
A 		4.7
(-0.6)
A 		7
C 17.3
(2)
A 		6.5
(-3)
A 		8
(-2.3)
A 		19.5
(3)
A 		13
avr 9.5
(3) 		4.5
(-3) 		7.7
(0.8) 		9.1
(2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 5.2
(-2.2)
A 		9.7
(-0.9)
A 		10.2
(-0.7)
M 		7.8
(-1.4)
A 		22.8
(3)
A 		2.4
(-3)
A 		20
B 1.9
(-1.5)
A 		4.2
(1.1)
A 		5.9
(3)
A 		3
(-0.3)
A 		5.5
(2.5)
A 		0.6
(-3)
A 		5
C 7
(-0.9)
A 		14.3
(2)
A 		1.9
(-2.9)
A 		1.7
(-3)
A 		2
(-2.9)
A 		16.8
(3)
A 		15
avr 4.7
(-2.5) 		9.4
(2.3) 		6
(-1.2) 		4.2
(-3) 		10.1
(3) 		6.6
(-0.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12859
Sequence Type Exemplar sequence
Representative Public ID K08G2.6 NCBI
Target Description K08G2.6 /REP_DB=WormBase Gene ID /WP=CE11966 /TR=Q93868 /GB=CAB03193.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028868
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K08G2.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15862544:15863569:-1 gene:K08G2.6 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
K08G2.15 2/11 Cross Hyb Matching Probes None
K08G2.14 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15861421-15863569(-) 100.0 100.0
Public Domain and Genome References
Ensembl K08G2.6
Sequence
Target Sequence 
>C. ELEGANS:178576_AT
ttttggcagcaacttttcctgttcctgcatttgtgaatgtacctgatcaagaatccggaa
aactgactgctcaaaatcatcctaaattctctcaacacagacccatctctatcaatacac
aacgtctacaaaagcagtatttcgttgccataagcttgcaatttgtcctcccgtttgtta
tcattgcttttccggctgcacatcttgtgctctcagtatatttaggatatcataatcaag
acgaactttattcaaaacttctacacactcttactatgattgaagttgtaactcattcct
tcggagcatacataataatttcaaaaactccaaaaaaggttgaatccgtgaaggctggca
tgttaattctacatatagttggagcaattgtggatgtttatttcagtcttttaactatgc
cagtaatactggttccagtttgtgctggctatccgctaggtattcttaaacttttcgggg
ttcctagttcggcgcaagtttaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGGCAGCAACTTTTCCTGTTCC 70 679 416 Antisense
CTTTTCCTGTTCCTGCATTTGTGAA 278 223 428 Antisense
GAATCCGGAAAACTGACTGCTCAAA 7 331 466 Antisense
ATCATCCTAAATTCTCTCAACACAG 91 31 491 Antisense
AACACAGACCCATCTCTATCAATAC 314 135 509 Antisense
CCATAAGCTTGCAATTTGTCCTCCC 343 271 563 Antisense
CACATCTTGTGCTCTCAGTATATTT 421 195 614 Antisense
AAACTTCTACACACTCTTACTATGA 236 127 670 Antisense
GTAACTCATTCCTTCGGAGCATACA 501 461 703 Antisense
CTGGCTATCCGCTAGGTATTCTTAA 458 241 860 Antisense
GTTCCTAGTTCGGCGCAAGTTTACA 14 441 895 Antisense
Sequence Source Affymetrix Proprietary Database