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[178575_at]

Description W07G4.1 /REP_DB=WormBase Gene ID /WP=CE14684 /TR=Q23216 /GB=CAB01445.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 08      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 21
(-2.6)
A 		24.8
(-2.4)
A 		12
(-3)
A 		134.3
(3)
A 		122
B 25.7
(-3)
A 		38.4
(-1)
A 		63.5
(3)
A 		39.4
(-0.8)
A 		38
C 44.2
(-3)
A 		44.8
(-2.9)
A 		55.2
(-0.6)
A 		71.8
(3)
M 		28
avr 30.3
(-3) 		36
(-2.3) 		43.6
(-1.5) 		81.8
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 67.2
(3)
A 		5.2
(-3)
A 		5.3
(-2.9)
A 		4.7
(-3)
A 		37
(0.1)
A 		48.6
(1.2)
A 		63
B 6.9
(-2.9)
A 		26.9
(3)
A 		6.7
(-3)
A 		19.7
(0.9)
A 		25.3
(2.5)
A 		24.9
(2.4)
A 		20
C 30.3
(1.1)
A 		41.2
(3)
A 		19.2
(-0.8)
A 		40.5
(2.9)
A 		6.5
(-3)
A 		18.6
(-0.9)
A 		35
avr 34.8
(3) 		24.4
(0.4) 		10.4
(-3) 		21.6
(-0.2) 		22.9
(0.1) 		30.7
(2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.6
(-1.4)
A 		5.4
(-2.2)
A 		3.1
(-3)
A 		19.7
(3)
A 		17
B 8.2
(-3)
A 		9.5
(-1.8)
A 		14.7
(3)
A 		8.4
(-2.8)
A 		7
C 14.6
(-0.9)
A 		12.9
(-2.3)
A 		19.2
(3)
A 		12.1
(-3)
M 		7
avr 10.1
(-1.8) 		9.3
(-3) 		12.3
(1.4) 		13.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 12.4
(3)
A 		1.8
(-2.6)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		11.2
(2.4)
A 		11.8
(2.7)
A 		11
B 2.4
(-2.4)
A 		8.9
(2)
A 		1.6
(-3)
A 		5.2
(-0.5)
A 		10.3
(3)
A 		9.3
(2.3)
A 		9
C 11.2
(2.2)
A 		12.6
(3)
A 		4.9
(-1.4)
A 		8.2
(0.5)
A 		2.1
(-3)
A 		6.2
(-0.7)
A 		11
avr 8.7
(2.6) 		7.8
(1.8) 		2.5
(-3) 		4.9
(-0.8) 		7.9
(1.9) 		9.1
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178575_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13013
Sequence Type Exemplar sequence
Representative Public ID W07G4.1 NCBI
Target Description W07G4.1 /REP_DB=WormBase Gene ID /WP=CE14684 /TR=Q23216 /GB=CAB01445.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073856(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073856 NCBI Caenorhabditis elegans W07G4.1 (W07G4.1) mRNA, complete cds. 11/11 None
W07G4.1 ENSEMBL cdna:known chromosome:CEL140:V:13036182:13036669:1 gene:W07G4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014595 6/11 Cross Hyb Matching Probes None
GENEFINDER00000014602 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13036181-13036669(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W07G4.1
Entrez Gene 189283 Entrez gene
SwissProt Q23216 EMBL-EBI
WormBase CE14684 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01445 Hypothetical protein W07G4.1 [Caenorhabditis elegans] ref|NP_506257.1| W07G4.1 [Caenorhabditis elegans] 6.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506257.1 2 13-32,37-59
W07G4.1 2 13-32,37-59
Sequence
Target Sequence 
>C. ELEGANS:178575_AT
aaaacatagtcttcctatcccttagaattttggaaacatttatcaagaatattctcgaaa
tcagcatctttgacgaattaatgccaatatttcaatatttttattctatatttctaagta
tttgcctatgggtatctgggtatttggaagctaagaatatcaagtatcctctcactcgag
ttcttcttcttccgaatcaaatgaacatcatcaccgtcgtcatcgcagaccgaagtttga
ccaccaatttcatggatatcacggaggacatgatgtttatcacggagatcatcacggata
taa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACATAGTCTTCCTATCCCTTAG 62 131 38 Antisense
GTCTTCCTATCCCTTAGAATTTTGG 476 465 46 Antisense
AATATTCTCGAAATCAGCATCTTTG 691 173 85 Antisense
ATTTGCCTATGGGTATCTGGGTATT 476 17 157 Antisense
GAATATCAAGTATCCTCTCACTCGA 5 327 192 Antisense
TCAAATGAACATCATCACCGTCGTC 203 629 234 Antisense
CGTCGTCATCGCAGACCGAAGTTTG 44 245 252 Antisense
GACCGAAGTTTGACCACCAATTTCA 548 381 265 Antisense
AATTTCATGGATATCACGGAGGACA 59 175 283 Antisense
GGAGGACATGATGTTTATCACGGAG 7 517 300 Antisense
ATCACGGAGATCATCACGGATATAA 34 29 316 Antisense
Sequence Source Affymetrix Proprietary Database