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[178573_at]

Description C44B9.1 /REP_DB=WormBase Gene ID /WP=CE05403 /TR=Q18602 /GB=CAA97778.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 69.9
(-3)
A 		76.6
(-1.7)
A 		100.3
(3)
A 		77.2
(-1.6)
A 		30
B 60
(-2.5)
A 		74.4
(3)
A 		58.6
(-3)
A 		62
(-1.7)
A 		16
C 66.8
(-0.5)
A 		83.6
(2.6)
A 		52.9
(-3)
A 		86
(3)
A 		33
avr 65.6
(-3) 		78.2
(3) 		70.6
(-0.6) 		75.1
(1.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 81.4
(3)
A 		53.9
(0.3)
A 		26.9
(-2.4)
A 		43.6
(-0.7)
A 		20.3
(-3)
A 		60.9
(1)
A 		61
B 49.6
(2.2)
A 		52.8
(2.6)
A 		55.7
(3)
A 		47.8
(2)
A 		8.3
(-2.9)
A 		7.4
(-3)
A 		48
C 37.3
(-2)
A 		68.9
(2)
A 		40.9
(-1.5)
A 		77.3
(3)
A 		39.8
(-1.6)
A 		28.9
(-3)
A 		48
avr 56.1
(2.6) 		58.5
(3) 		41.2
(0.1) 		56.2
(2.6) 		22.8
(-3) 		32.4
(-1.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 25.5
(2.7)
A 		16.6
(-0.9)
A 		26.2
(3)
A 		11.3
(-3)
A 		15
B 19.1
(3)
A 		18.4
(2.3)
A 		13.6
(-2.6)
A 		13.2
(-3)
A 		6
C 22.1
(1.8)
A 		24
(3)
A 		18.4
(-0.5)
A 		14.5
(-3)
A 		10
avr 22.2
(3) 		19.7
(1.4) 		19.4
(1.2) 		13
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 15
(1.1)
A 		19.2
(3)
A 		5.9
(-3)
A 		11.1
(-0.7)
A 		6.1
(-2.9)
A 		14.8
(1)
A 		13
B 17.2
(2.8)
A 		17.6
(3)
A 		13.5
(1.3)
A 		12.7
(1)
A 		3.4
(-2.8)
A 		2.8
(-3)
A 		15
C 13.8
(-0.8)
A 		21
(3)
A 		10.4
(-2.6)
A 		15.5
(0.1)
A 		12.9
(-1.3)
A 		9.7
(-3)
A 		11
avr 15.3
(1) 		19.3
(3) 		9.9
(-1.8) 		13.1
(-0.2) 		7.5
(-3) 		9.1
(-2.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178573_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6083
Sequence Type Exemplar sequence
Representative Public ID C44B9.1 NCBI
Target Description C44B9.1 /REP_DB=WormBase Gene ID /WP=CE05403 /TR=Q18602 /GB=CAA97778.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066993(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066993 NCBI Caenorhabditis elegans C44B9.1 (C44B9.1) mRNA, complete cds. 11/11 None
SNAP00000022573 ENSEMBL cdna:SNAP chromosome:CEL140:III:10869269:10877891:1 11/11 None
GENEFINDER00000022582 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10869269:10874405:1 11/11 None
C44B9.1 ENSEMBL cdna:known chromosome:CEL140:III:10869269:10874405:1 gene:C44B9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10869264-10873137(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B9.1
Entrez Gene 183433 Entrez gene
SwissProt Q18602 EMBL-EBI
WormBase CE37754 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15474_AT expressed protein at
ATH1-121501:264065_AT expressed protein at
ATH1-121501:264064_AT expressed protein at
ATH1-121501:264063_AT expressed protein at
CANINE_2:CFA.19541.1.S1_S_AT similar to CG4996-PA cfa
CANINE_2:CFA.19541.2.A1_AT similar to CG4996-PA cfa
CANINE_2:CFAAFFX.3956.1.S1_AT similar to CG4996-PA cfa
DROSOPHILA_2:1630423_AT dm
DROSGENOME1:141796_AT dm
CHICKEN:GGAAFFX.21703.1.S1_S_AT similar to 1700034M03Rik protein gga
CHICKEN:GGAAFFX.5981.1.S1_S_AT similar to 1700034M03Rik protein gga
HG-U133_PLUS_2:207045_AT hypothetical protein FLJ20097 hs
HG-U133A:207045_AT hypothetical protein FLJ20097 hs
HG-U133A_2:207045_AT hypothetical protein FLJ20097 hs
HU35KSUBB:RC_N24716_AT hypothetical protein FLJ20097 hs
U133_X3P:G8923107_3P_AT hypothetical protein FLJ20097 hs
U133_X3P:HS2.12244.2.S1_3P_S_AT hypothetical protein FLJ20097 hs
U133_X3P:HS2.12244.2.S1_3P_AT hypothetical protein FLJ20097 hs
U133_X3P:HS.12244.1.S1_3P_AT hypothetical protein FLJ20097 hs
HG-U133_PLUS_2:1554216_AT hypothetical protein FLJ20097 hs
HG-U133_PLUS_2:1554217_A_AT hypothetical protein FLJ20097 hs
HG-U133_PLUS_2:226031_AT hypothetical protein FLJ20097 hs
HG-U133B:226031_AT hypothetical protein FLJ20097 hs
HG-U95C:52181_AT hypothetical protein FLJ20097 hs
HG-U95B:57567_AT hypothetical protein FLJ20097 hs
HG-U95D:85907_AT hypothetical protein FLJ20097 hs
HG-U95E:71979_AT Hypothetical protein FLJ20097 hs
HG-U95E:71981_AT Hypothetical protein FLJ20097 hs
HG-U95D:79671_AT Hypothetical protein FLJ20097 hs
HG-U95D:85401_AT Hypothetical protein FLJ20097 hs
MOE430A:1432094_A_AT RIKEN cDNA 1700034M03 gene mm
MOUSE430A_2:1432094_A_AT RIKEN cDNA 1700034M03 gene mm
MOUSE430_2:1432094_A_AT RIKEN cDNA 1700034M03 gene mm
MG-U74BV2:112773_AT RIKEN cDNA 1700034M03 gene mm
MOE430B:1430035_AT RIKEN cDNA 1700034M03 gene mm
MOUSE430_2:1430035_AT RIKEN cDNA 1700034M03 gene mm
MU19KSUBC:TC38303_AT RIKEN cDNA 1700034M03 gene, mRNA (cDNA clone MGC:30584 IMAGE:3500316) mm
RG-U34C:RC_AI172187_AT similar to RIKEN cDNA 1700034M03 gene (predicted) rn
RAE230A:1398371_AT similar to RIKEN cDNA 1700034M03 gene (predicted) rn
RAT230_2:1398371_AT similar to RIKEN cDNA 1700034M03 gene (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16462 pyrophosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97778 Hypothetical protein C44B9.1 [Caenorhabditis elegans] ref|NP_499394.2| C44B9.1 [Caenorhabditis elegans] 0.0
blast CAE71390 Hypothetical protein CBG18297 [Caenorhabditis briggsae] 0.0
blast CAA97779 Hypothetical protein C44B9.2 [Caenorhabditis elegans] ref|NP_499395.1| C44B9.2 [Caenorhabditis elegans] 0.0
blast XP_615280 PREDICTED: similar to CG4996-PA [Bos taurus] 1.0E-100
Sequence
Target Sequence 
>C. ELEGANS:178573_AT
tatcgccggctgtgcaaatcgcgttcatcgataatctctacggagcttgtgagcggatta
ttgcagtgaattccatcgaattcgtggcgcgacaactagatctcattcgtccagtcatcg
aatcactgcttctcgaagacacccgggaacacctctccacaattctcgacgccttctaca
cacaagttctcccatgtcaagctgacgcccgaattctgatcgttgacgcgtcggcttcac
gatctctccgactgaagagcctcatcgatagtgtgacgtctgtgaaatgggacatcggag
agctgagaagtgagcacaacgcctacgtggatcttcttgttcaggactatgaactatttt
cgattcgaatcaccgctatcaaggagacggcgcctgtcaatttgtccgaagcaatggaga
aattcttttgggaacgagcgatctattattcgtttaaggcacttgttcagggatatggag
atggtggaaaatgttcgacggaaggccgagcgttgatgcagttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGCCGGCTGTGCAAATCGCGTT 558 657 2072 Antisense
ATTCCATCGAATTCGTGGCGCGACA 517 7 2141 Antisense
TAGATCTCATTCGTCCAGTCATCGA 259 653 2168 Antisense
GAATCACTGCTTCTCGAAGACACCC 466 327 2191 Antisense
TACACACAAGTTCTCCCATGTCAAG 192 643 2248 Antisense
GACGCCCGAATTCTGATCGTTGACG 433 381 2275 Antisense
GATCTCTCCGACTGAAGAGCCTCAT 411 419 2312 Antisense
GAGCCTCATCGATAGTGTGACGTCT 602 385 2328 Antisense
CACAACGCCTACGTGGATCTTCTTG 282 193 2386 Antisense
AAGGAGACGGCGCCTGTCAATTTGT 293 161 2452 Antisense
GAAGGCCGAGCGTTGATGCAGTTGG 339 333 2572 Antisense
Sequence Source Affymetrix Proprietary Database