[Home] | [Total List]

[178572_at]

Description C25A1.9 /REP_DB=WormBase Gene ID /WP=CE18532 /TR=O02217 /GB=CAB02769.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      6grp_total > 87      4grp_total > 56      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 174.4
(-0.1)
M 		178.9
(0.1)
M 		234
(3)
P 		118.8
(-3)
M 		115
B 194.5
(2.6)
M 		198.7
(3)
P 		183.8
(1.7)
P 		131.8
(-3)
A 		67
C 142.6
(-3)
P 		191.2
(0.3)
P 		230.7
(3)
P 		205
(1.2)
A 		88
avr 170.5
(-1.3) 		189.6
(0.5) 		216.2
(3) 		151.9
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 679
1 2 3 4 5 6 range
A 159.5
(-3)
M 		268.5
(-2)
P 		203.4
(-2.6)
P 		296.4
(-1.8)
P 		427
(-0.6)
P 		820.4
(3)
P 		661
B 239.7
(-1.9)
P 		183
(-2.5)
P 		141.9
(-3)
P 		286.8
(-1.4)
P 		426.6
(0.2)
P 		679.1
(3)
P 		537
C 146.3
(-3)
P 		198.9
(-2.5)
P 		293.7
(-1.6)
P 		325.8
(-1.3)
P 		537.8
(0.7)
P 		775.3
(3)
P 		629
avr 181.8
(-3) 		216.8
(-2.6) 		213
(-2.7) 		303
(-1.7) 		463.8
(-0.1) 		758.3
(3) 		577
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 63.5
(3)
M 		38.8
(-0.2)
M 		61.2
(2.7)
P 		17.4
(-3)
M 		46
B 62
(3)
M 		49.1
(0.7)
P 		42.6
(-0.4)
P 		28.1
(-3)
A 		34
C 47.2
(-1.3)
P 		55
(-0.3)
P 		80.4
(3)
P 		34.6
(-3)
A 		46
avr 57.6
(2.3) 		47.6
(0.6) 		61.4
(3) 		26.7
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 29.4
(-3)
M 		95.5
(-0.7)
P 		44.3
(-2.5)
P 		75.2
(-1.4)
P 		128.8
(0.5)
P 		199.7
(3)
P 		170
B 83.4
(-1.7)
P 		60.9
(-2.3)
P 		34.5
(-3)
P 		76
(-1.9)
P 		173.3
(0.8)
P 		253.2
(3)
P 		219
C 54.2
(-3)
P 		60.7
(-2.8)
P 		74.8
(-2.4)
P 		65.5
(-2.7)
P 		174
(0.5)
P 		259.5
(3)
P 		205
avr 55.7
(-2.9) 		72.4
(-2.3) 		51.2
(-3) 		72.2
(-2.3) 		158.7
(0.5) 		237.5
(3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2188
Sequence Type Exemplar sequence
Representative Public ID C25A1.9 NCBI
Target Description C25A1.9 /REP_DB=WormBase Gene ID /WP=CE18532 /TR=O02217 /GB=CAB02769.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060282 NCBI Caenorhabditis elegans C25A1.9 (C25A1.9) mRNA, complete cds. 11/11 None
SNAP00000000658 ENSEMBL cdna:SNAP chromosome:CEL140:I:10193999:10195593:1 11/11 None
GENEFINDER00000000664 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10193999:10195593:1 11/11 None
C25A1.9 ENSEMBL cdna:known chromosome:CEL140:I:10193953:10195610:1 gene:C25A1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10193929-10195524(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25A1.9
Entrez Gene 172886 Entrez gene
SwissProt O02217 EMBL-EBI
WormBase CE18532 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02769 Hypothetical protein C25A1.9 [Caenorhabditis elegans] ref|NP_492683.1| C25A1.9 [Caenorhabditis elegans] 0.0
blast CAB02769 Hypothetical protein C25A1.9 [Caenorhabditis elegans] ref|NP_492683.1| C25A1.9 [Caenorhabditis elegans] 1.0E-134
blast CAE66852 Hypothetical protein CBG12224 [Caenorhabditis briggsae] 1.0E-131
blast CAE66852 Hypothetical protein CBG12224 [Caenorhabditis briggsae] 1.0E-129
blast CAE66852 Hypothetical protein CBG12224 [Caenorhabditis briggsae] 2.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.052
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.052
Sequence
Target Sequence 
>C. ELEGANS:178572_AT
tacttgcttcaacacttctactacaactcgaagagtgtattcatgcagagaatcattgct
tatcacctccgaaaattgatgtattcaccgtcgctcaatttcgaaccactttatcagaat
tccgattccttgactcccaacgaaagggattgttggcgccagcggacttgaaatttttca
gagacggaatcttcaatgaggttttcaccaagcgaatcttcgaaatttcaataacctatg
aagatggacgtattgatttcaaagcgttcgttgattttgtcaccgctctaaagttccgtc
ataccactgcctccgccaaataccatttcgaaattctggatctaaaggatgatggactgt
tggatgaggaagaaattcgatcaatatcatcatttcagcttcaaaacctgccagattacg
tcccggaagataatagtgtgaacccggaagtagcaactgccgaactgagagatatgatgc
gtctgaatcagaatggaattacattggaagagtttcttgctaatcggatgaactcgacgt
ttgctggattcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTGCTTCAACACTTCTACTACA 216 645 629 Antisense
GAGAATCATTGCTTATCACCTCCGA 415 391 676 Antisense
TGTATTCACCGTCGCTCAATTTCGA 29 559 708 Antisense
GCTCAATTTCGAACCACTTTATCAG 69 301 721 Antisense
ATCAGAATTCCGATTCCTTGACTCC 573 27 741 Antisense
CGAAAGGGATTGTTGGCGCCAGCGG 100 253 769 Antisense
GGCGCCAGCGGACTTGAAATTTTTC 214 541 783 Antisense
GAGGTTTTCACCAAGCGAATCTTCG 350 401 826 Antisense
GCGTTCGTTGATTTTGTCACCGCTC 312 291 892 Antisense
TCAAAACCTGCCAGATTACGTCCCG 570 629 1029 Antisense
TGAACTCGACGTTTGCTGGATTCCT 575 573 1157 Antisense
Sequence Source Affymetrix Proprietary Database