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[178571_s_at]

Description C37A5.2 /REP_DB=WormBase Gene ID /WP=CE17529 /TR=O62092 /GB=CAB07334.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 159.4
(2.8)
P 		10.3
(-3)
A 		30.9
(-2.2)
A 		164.9
(3)
P 		155
B 176.5
(3)
P 		55.4
(-1.6)
A 		18.5
(-3)
A 		160.9
(2.4)
P 		158
C 185.2
(3)
P 		44.4
(-2.3)
A 		26
(-3)
A 		159.1
(2)
P 		159
avr 173.7
(3) 		36.7
(-2.5) 		25.1
(-3) 		161.6
(2.5) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 108.4
(3)
P 		80.4
(1.4)
P 		58.5
(0.1)
A 		60.9
(0.2)
A 		5.8
(-3)
A 		83.2
(1.5)
P 		103
B 109.3
(2.4)
P 		52.1
(-1.5)
A 		37.3
(-2.5)
A 		30.1
(-3)
A 		41.1
(-2.3)
A 		118.6
(3)
P 		89
C 249.1
(3)
P 		74.3
(-1.9)
A 		65.5
(-2.1)
A 		77.4
(-1.8)
A 		34.9
(-3)
A 		114.6
(-0.8)
P 		214
avr 155.6
(3) 		68.9
(-1.1) 		53.8
(-1.8) 		56.1
(-1.7) 		27.3
(-3) 		105.5
(0.7) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 58
(3)
P 		2.2
(-3)
A 		8.1
(-2.4)
A 		24.1
(-0.6)
P 		56
B 56.3
(3)
P 		13.7
(-1.9)
A 		4.3
(-3)
A 		34.3
(0.5)
P 		52
C 61.3
(3)
P 		12.8
(-2.6)
A 		9.1
(-3)
A 		26.8
(-1)
P 		52
avr 58.5
(3) 		9.6
(-2.7) 		7.2
(-3) 		28.4
(-0.5) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 20
(1.1)
P 		28.6
(3)
P 		12.7
(-0.6)
A 		15.4
(0)
A 		1.8
(-3)
A 		20.3
(1.1)
P 		27
B 38
(2)
P 		17.3
(-1.5)
A 		9.1
(-2.8)
A 		8
(-3)
A 		16.7
(-1.6)
A 		44.2
(3)
P 		36
C 92.3
(3)
P 		22.7
(-2.2)
A 		16.7
(-2.6)
A 		15.6
(-2.7)
A 		11.3
(-3)
A 		38.4
(-1)
P 		81
avr 50.1
(3) 		22.9
(-1.1) 		12.8
(-2.6) 		13
(-2.5) 		9.9
(-3) 		34.3
(0.6) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178571_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.749
Sequence Type Exemplar sequence
Representative Public ID C37A5.2 NCBI
Target Description C37A5.2 /REP_DB=WormBase Gene ID /WP=CE17529 /TR=O62092 /GB=CAB07334.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061069(11), NM_061068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061069 NCBI Caenorhabditis elegans C37A5.2 (C37A5.2) mRNA, complete cds. 11/11 A 
NM_061068 NCBI Caenorhabditis elegans C37A5.4 (C37A5.4) mRNA, complete cds. 11/11 A 
SNAP00000011857 ENSEMBL cdna:SNAP chromosome:CEL140:I:14161421:14162188:-1 11/11 None
GENEFINDER00000011870 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14161421:14162188:-1 11/11 None
SNAP00000011859 ENSEMBL cdna:SNAP chromosome:CEL140:I:14163615:14164378:1 11/11 None
C37A5.4 ENSEMBL cdna:known chromosome:CEL140:I:14161421:14162286:-1 gene:C37A5.4 11/11 A 
C37A5.2 ENSEMBL cdna:known chromosome:CEL140:I:14163615:14164434:1 gene:C37A5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011868 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14163545-14164309(+) 88.54 100.0
chrI:14161351-14162119(-) 85.59 97.05
Public Domain and Genome References
Gene Title

Ensembl C37A5.4
C37A5.2
Entrez Gene 173283 Entrez gene
259409 Entrez gene
SwissProt O62092 EMBL-EBI
O62091 EMBL-EBI
WormBase CE17529 Wormbase
CE17530 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07333 Hypothetical protein C37A5.4 [Caenorhabditis elegans] ref|NP_493469.1| C37A5.4 [Caenorhabditis elegans] 8.0E-83
blast CAB07334 Hypothetical protein C37A5.2 [Caenorhabditis elegans] ref|NP_493470.1| C37A5.2 [Caenorhabditis elegans] 4.0E-82
blast CAB07333 Hypothetical protein C37A5.4 [Caenorhabditis elegans] ref|NP_493469.1| C37A5.4 [Caenorhabditis elegans] 7.0E-79
blast CAB07334 Hypothetical protein C37A5.2 [Caenorhabditis elegans] ref|NP_493470.1| C37A5.2 [Caenorhabditis elegans] 7.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493470.1 2 4-21,154-176
NP_493469.1 2 4-21,154-176
C37A5.4 2 4-21,154-176
C37A5.2 2 4-21,154-176
SNAP00000011857 2 4-21,154-176
GENEFINDER00000011870 2 4-21,154-176
SNAP00000011859 2 4-21,154-176
Sequence
Target Sequence 
>C. ELEGANS:178571_S_AT
atgaagttcatttctgtattccttgttgcaatcctggcgatcggagcattctgtgcaaca
gaaaccgagtccaagatgaagatgggaggatcaggttcggatgtgaagactcagatgaac
atgaattcccaggcaccacacacccttgaacgccgttcggaagcccaatccagtatgaag
ttggatggacaaaaatccggtgtgaagacagaaatgagcatggattcccagacaccgcaa
atccgtgatacccgttcggaaaccgagacaaagatgaagatggaaggacaaggatcagac
atgaaaactgaaataaaccagcaaatggatactccacacaccctcgaacgccgctcggaa
accgaatcacagattaagatggaaggacagggatccggtgtgaagactgaaatgaaccag
caaatggacgctgaagctccacacatccgtgaccgtcgctggggatactacggtggaatg
ggaggatacggcatgggatacggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAAGTTCATTTCTGTATTCCTTG 243 45 13 Antisense
CTGTATTCCTTGTTGCAATCCTGGC 175 229 26 Antisense
GTTGCAATCCTGGCGATCGGAGCAT 402 439 37 Antisense
GGCGATCGGAGCATTCTGTGCAACA 410 541 48 Antisense
CTGTGCAACAGAAACCGAGTCCAAG 710 189 63 Antisense
TGATACCCGTTCGGAAACCGAGACA 191 557 258 Antisense
GGAAGGACAGGGATCCGGTGTGAAG 703 527 393 Antisense
GAACCAGCAAATGGACGCTGAAGCT 218 345 426 Antisense
GTGACCGTCGCTGGGGATACTACGG 149 483 461 Antisense
GCTGGGGATACTACGGTGGAATGGG 95 291 470 Antisense
GGAGGATACGGCATGGGATACGGAA 59 517 493 Antisense
Sequence Source Affymetrix Proprietary Database