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[178569_at] 7TM chemoreceptor, sri family

Description F15H9.4 /REP_DB=WormBase Gene ID /WP=CE17678 /TR=O62177 /GB=CAB04118.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 11      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 33.5
(-1.1)
A 		56.1
(1.3)
A 		16
(-3)
A 		71.4
(3)
A 		55
B 24.2
(-1)
A 		27.7
(-0.6)
A 		5.6
(-3)
A 		60.8
(3)
A 		55
C 22.9
(-2)
A 		10.3
(-3)
A 		26.1
(-1.8)
A 		88.8
(3)
A 		79
avr 26.9
(-1.9) 		31.4
(-1.4) 		15.9
(-3) 		73.7
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 4.8
(-3)
A 		49.1
(3)
A 		41.3
(1.9)
A 		39.9
(1.8)
A 		28.2
(0.2)
A 		18.5
(-1.1)
A 		44
B 30.7
(-0.2)
A 		6.8
(-3)
A 		58.2
(3)
P 		31.8
(-0.1)
A 		15.8
(-1.9)
A 		22.3
(-1.2)
A 		51
C 29.9
(2.7)
A 		19.2
(0.3)
A 		31.4
(3)
A 		18.2
(0)
A 		4.7
(-3)
A 		26.5
(1.9)
A 		27
avr 21.8
(-1.8) 		25
(-1.1) 		43.6
(3) 		30
(0) 		16.2
(-3) 		22.4
(-1.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.2
(3)
A 		12.2
(3)
A 		4.2
(-3)
A 		10.5
(1.7)
A 		8
B 7.7
(0.3)
A 		6.8
(-0.2)
A 		1.3
(-3)
A 		13
(3)
A 		12
C 7.6
(-0.7)
A 		3
(-3)
A 		9.1
(0)
A 		15
(3)
A 		12
avr 9.2
(0.3) 		7.3
(-1.2) 		4.9
(-3) 		12.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.9
(-3)
A 		17.5
(3)
A 		9
(-0.1)
A 		10.1
(0.3)
A 		8.5
(-0.3)
A 		4.5
(-1.7)
A 		17
B 10.7
(1.3)
A 		2.3
(-3)
A 		14.1
(3)
P 		8.4
(0.1)
A 		6.4
(-0.9)
A 		8.3
(0.1)
A 		12
C 11.1
(3)
A 		5.9
(-0.3)
A 		8
(1.1)
A 		3.7
(-1.6)
A 		1.5
(-3)
A 		8.9
(1.6)
A 		10
avr 7.6
(-0.4) 		8.6
(0.8) 		10.4
(3) 		7.4
(-0.7) 		5.5
(-3) 		7.2
(-0.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1835
Sequence Type Exemplar sequence
Representative Public ID F15H9.4 NCBI
Target Description F15H9.4 /REP_DB=WormBase Gene ID /WP=CE17678 /TR=O62177 /GB=CAB04118.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060670(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060670 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-16) (sri-16) mRNA, complete cds. 11/11 None
GENEFINDER00000007320 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12155255:12158863:-1 11/11 None
SNAP00000007308 ENSEMBL cdna:SNAP chromosome:CEL140:I:12156202:12157090:-1 9/11 None
F15H9.4 ENSEMBL cdna:known chromosome:CEL140:I:12156372:12158863:-1 gene:F15H9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12156302-12158794(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-16
Ensembl F15H9.4
Entrez Gene 184551 Entrez gene
SwissProt O62177 EMBL-EBI
WormBase CE17678 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04118 Hypothetical protein F15H9.4 [Caenorhabditis elegans] ref|NP_493071.1| Serpentine Receptor, class I family member (sri-16) [Caenorhabditis elegans] 0.0
blast CAB04117 Hypothetical protein F15H9.3 [Caenorhabditis elegans] ref|NP_493070.2| Serpentine Receptor, class I family member (sri-17) [Caenorhabditis elegans] 1.0E-151
blast CAB04117 Hypothetical protein F15H9.3 [Caenorhabditis elegans] ref|NP_493070.2| Serpentine Receptor, class I family member (sri-17) [Caenorhabditis elegans] 1.0E-149
blast CAB04119 Hypothetical protein F15H9.2 [Caenorhabditis elegans] ref|NP_493072.1| Serpentine Receptor, class I family member (sri-15) [Caenorhabditis elegans] 1.0E-134
blast CAB04119 Hypothetical protein F15H9.2 [Caenorhabditis elegans] ref|NP_493072.1| Serpentine Receptor, class I family member (sri-15) [Caenorhabditis elegans] 1.0E-132
blast CAB04118 Hypothetical protein F15H9.4 [Caenorhabditis elegans] ref|NP_493071.1| Serpentine Receptor, class I family member (sri-16) [Caenorhabditis elegans] 9.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-97
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.5E-44
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493071.1 7 15-37,50-72,92-114,135-157,195-217,238-260,275-297
F15H9.4 7 15-37,50-72,92-114,135-157,195-217,238-260,275-297
GENEFINDER00000007320 6 15-37,50-72,92-114,135-157,195-217,238-260
SNAP00000007308 3 45-67,88-110,125-147
Sequence
Target Sequence 
>C. ELEGANS:178569_AT
ttcatccgcattttgcatgttccagtcaaaacttaccccgcaacaaaggatggattacgt
gaataataactttccgcaatgcttggaatggctgaaatttgaggcttttgaagtctacga
ctatcatccaaatcgatggctggttgctcttggagcagtagtttttgcgactattttcgt
ggcttattcatacgccatgacccttggtgtccacactatgattatacttcagaagtttcg
aaaatcgatgtctcgtcaaacatatcaaatgcacaaaactgcacttttcagcttaattat
gcaaattgtgattccaggggtgttgcttgtggcgccattgagtttttgtatgtttgtgat
tataatggaggaagttggattgcaagagctcgccactggctctatgttctttgtggcctc
ccactcaatgtgctccagtgcggtgatgattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATCCGCATTTTGCATGTTCCAG 260 687 447 Antisense
CATGTTCCAGTCAAAACTTACCCCG 708 63 462 Antisense
GAAGTCTACGACTATCATCCAAATC 504 335 556 Antisense
AATCGATGGCTGGTTGCTCTTGGAG 317 169 577 Antisense
GTTTTTGCGACTATTTTCGTGGCTT 374 447 607 Antisense
GTGGCTTATTCATACGCCATGACCC 251 491 625 Antisense
GACCCTTGGTGTCCACACTATGATT 612 381 645 Antisense
GATTCCAGGGGTGTTGCTTGTGGCG 133 431 756 Antisense
CTTGTGGCGCCATTGAGTTTTTGTA 53 219 772 Antisense
TGGCTCTATGTTCTTTGTGGCCTCC 444 545 843 Antisense
TGTGCTCCAGTGCGGTGATGATTCT 137 557 875 Antisense
Sequence Source Affymetrix Proprietary Database