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[178568_s_at]

Description C49F5.6 /REP_DB=WormBase Gene ID /WP=CE08857 /TR=O17684 /GB=CAB03979.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 14.9
(-0.4)
A 		20.5
(3)
A 		10.7
(-3)
A 		17.7
(1.3)
A 		10
B 18.2
(-2.3)
A 		93.1
(3)
A 		50.7
(-0)
A 		8.5
(-3)
A 		85
C 55.2
(1.5)
A 		69.6
(3)
A 		10.6
(-3)
A 		18
(-2.2)
A 		59
avr 29.4
(-1.1) 		61.1
(3) 		24
(-1.8) 		14.7
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 115.5
(-1.3)
A 		125.3
(-1.1)
A 		39.6
(-3)
A 		156.8
(-0.3)
A 		210.6
(0.9)
A 		304.6
(3)
A 		265
B 114
(-1.7)
A 		89.1
(-2.5)
A 		75.8
(-3)
A 		140.2
(-0.8)
A 		127.1
(-1.2)
A 		251.3
(3)
P 		176
C 121.5
(-2.3)
A 		131.4
(-1.9)
A 		169.3
(-0.4)
A 		103.4
(-3)
A 		196.6
(0.7)
A 		253
(3)
P 		150
avr 117
(-2.2) 		115.3
(-2.3) 		94.9
(-3) 		133.5
(-1.7) 		178.1
(-0.1) 		269.6
(3) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 5.4
(3)
A 		4.4
(0.9)
A 		2.8
(-2.6)
A 		2.6
(-3)
A 		3
B 5.8
(-1.9)
A 		23
(3)
A 		11.7
(-0.2)
A 		1.8
(-3)
A 		21
C 18.3
(2.4)
A 		20
(3)
A 		3.7
(-2.8)
A 		3
(-3)
A 		17
avr 9.8
(0.3) 		15.8
(3) 		6.1
(-1.4) 		2.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 21.3
(-1.8)
A 		44.6
(0.3)
A 		8.6
(-3)
A 		39.8
(-0.1)
A 		63.5
(2)
A 		74.2
(3)
A 		66
B 39.7
(-1.3)
A 		29.7
(-2.1)
A 		18.4
(-3)
A 		37.1
(-1.5)
A 		51.7
(-0.3)
A 		93.7
(3)
P 		75
C 45
(-0.7)
A 		40.1
(-1.2)
A 		43.1
(-0.9)
A 		20.8
(-3)
A 		63.6
(1)
A 		84.7
(3)
P 		64
avr 35.3
(-1.8) 		38.1
(-1.5) 		23.4
(-3) 		32.6
(-2.1) 		59.6
(0.6) 		84.2
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 178568_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16610
Sequence Type Exemplar sequence
Representative Public ID C49F5.6 NCBI
Target Description C49F5.6 /REP_DB=WormBase Gene ID /WP=CE08857 /TR=O17684 /GB=CAB03979.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077606 NCBI Caenorhabditis elegans C49F5.6 (C49F5.6) mRNA, complete cds. 11/11 None
SNAP00000033511 ENSEMBL cdna:SNAP chromosome:CEL140:X:11988297:11990933:1 11/11 None
GENEFINDER00000033517 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11988297:11990933:1 11/11 None
C49F5.6 ENSEMBL cdna:known chromosome:CEL140:X:11988235:11991188:1 gene:C49F5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11988296-11990933(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C49F5.6
Entrez Gene 181372 Entrez gene
SwissProt O17684 EMBL-EBI
WormBase CE08857 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03979 Hypothetical protein C49F5.6 [Caenorhabditis elegans] ref|NP_510007.1| C49F5.6 [Caenorhabditis elegans] 0.0
blast CAA94618 Hypothetical protein F23D12.2 [Caenorhabditis elegans] emb|CAA94917.1| Hypothetical protein F23D12.2 [Caenorhabditis elegans] ref|NP_510401.1| F23D12.2 [Caenorhabditis elegans] 3.0E-21
Sequence
Target Sequence 
>C. ELEGANS:178568_S_AT
ggccagaagctgcacttgctgaaccaaaactgggcaagccactgttgccagttgagaatg
tgttgcagtattcaaagtctccatcaaagacagctgtcactaacaagccgacaaaaaccg
ttctcaaagcaaatttcaatgctccaattggaaagatcaactcggacatcagctttttca
ctccaaagaaggtgtttgggaagagcgagtatcaatacggaccatcaatgggcaaactga
ttcaaatgatgggtactggaactccaaagaaggtgttgccagagtttggatcgtcttcaa
agactgcattattctcgccacgaaaagaagaacattgtgctggtgctccacgtggttcat
ggaagattgcaaaaatgcgtgtacgcaccaaactgtccaacttctatccatcaagccgct
ctaaaaattcgcagcaaattcgcgggaaatggttgggacagaatattgttcagttctcgg
gtcatcattccatgattgctcagtctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCAGAAGCTGCACTTGCTGAACC 662 541 1784 Antisense
ACTGGGCAAGCCACTGTTGCCAGTT 283 97 1812 Antisense
AGACAGCTGTCACTAACAAGCCGAC 108 73 1871 Antisense
TCAACTCGGACATCAGCTTTTTCAC 90 631 1940 Antisense
GTTGCCAGAGTTTGGATCGTCTTCA 249 441 2058 Antisense
CAAAGACTGCATTATTCTCGCCACG 262 193 2081 Antisense
GAAGAACATTGTGCTGGTGCTCCAC 132 341 2110 Antisense
GGTGCTCCACGTGGTTCATGGAAGA 407 501 2125 Antisense
TTCTATCCATCAAGCCGCTCTAAAA 503 691 2185 Antisense
TATTGTTCAGTTCTCGGGTCATCAT 31 667 2247 Antisense
ATCATTCCATGATTGCTCAGTCTGC 431 29 2267 Antisense
Sequence Source Affymetrix Proprietary Database