[Home] | [Total List]

[178567_at]

Description T05A6.5 /REP_DB=WormBase Gene ID /WP=CE03632 /TR=Q22201 /GB=CAA90669.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 11      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 23.6
(-1.2)
A 		52.9
(1.7)
A 		5.1
(-3)
A 		66.2
(3)
A 		61
B 22.1
(1.2)
A 		4.9
(-3)
A 		29.7
(3)
A 		17.6
(0.1)
A 		25
C 31.5
(-2.4)
A 		25.7
(-3)
A 		28.5
(-2.7)
A 		83.9
(3)
A 		58
avr 25.7
(-2.2) 		27.8
(-1.8) 		21.1
(-3) 		55.9
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 16.4
(-1.5)
A 		35.6
(3)
A 		33.9
(2.6)
A 		11.7
(-2.6)
A 		16.1
(-1.6)
A 		9.9
(-3)
A 		26
B 30.7
(3)
A 		27.1
(2.1)
A 		6.3
(-3)
A 		14.9
(-0.9)
A 		22.8
(1.1)
A 		21.5
(0.7)
A 		24
C 21.8
(1.4)
A 		3.7
(-3)
A 		27
(2.7)
A 		28.4
(3)
A 		13.3
(-0.7)
A 		6.7
(-2.3)
A 		25
avr 23
(3) 		22.1
(2.5) 		22.4
(2.7) 		18.3
(0.3) 		17.4
(-0.3) 		12.7
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 8.6
(1.3)
A 		11.5
(3)
A 		1.3
(-3)
A 		9.7
(1.9)
A 		10
B 7
(3)
A 		1.2
(-3)
A 		6.9
(2.9)
A 		3.8
(-0.3)
A 		6
C 10.4
(-0.3)
A 		7.4
(-3)
A 		9.9
(-0.8)
A 		14.1
(3)
A 		7
avr 8.7
(2.1) 		6.7
(-1.7) 		6
(-3) 		9.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 3
(-2.7)
A 		12.7
(3)
A 		7.4
(-0.1)
A 		3
(-2.7)
A 		4.9
(-1.5)
A 		2.4
(-3)
A 		10
B 10.7
(3)
A 		9
(1.9)
A 		1.5
(-3)
A 		3.9
(-1.4)
A 		9.3
(2.1)
A 		8
(1.2)
A 		9
C 8.1
(3)
A 		1.1
(-3)
A 		6.9
(2)
A 		5.7
(0.9)
A 		4.3
(-0.3)
A 		2.2
(-2.1)
A 		7
avr 7.3
(2.5) 		7.6
(3) 		5.3
(-1.1) 		4.2
(-3) 		6.2
(0.5) 		4.2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5179
Sequence Type Exemplar sequence
Representative Public ID T05A6.5 NCBI
Target Description T05A6.5 /REP_DB=WormBase Gene ID /WP=CE03632 /TR=Q22201 /GB=CAA90669.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063243
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063243 NCBI Caenorhabditis elegans T05A6.5 (T05A6.5) mRNA, complete cds. None
SNAP00000031185 ENSEMBL cdna:SNAP chromosome:CEL140:II:7825793:7826615:1 None
T05A6.5 ENSEMBL cdna:known chromosome:CEL140:II:7822933:7825118:1 gene:T05A6.5 None
T05A6.6 ENSEMBL cdna:pseudogene chromosome:CEL140:II:7825329:7826615:1 gene:T05A6.6 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7822929-7826612(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A6.5
T05A6.6
Entrez Gene 188080 Entrez gene
SwissProt Q22201 EMBL-EBI
WormBase CE34985 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90669 Hypothetical protein T05A6.5 [Caenorhabditis elegans] ref|NP_495644.2| T05A6.5 [Caenorhabditis elegans] 1.0E-141
blast CAA19493 Hypothetical protein Y37A1B.10 [Caenorhabditis elegans] ref|NP_502686.2| Serpentine Receptor, class W family member (srw-63) [Caenorhabditis elegans] 8.0E-68
blast CAA19492 Hypothetical protein Y37A1B.9 [Caenorhabditis elegans] ref|NP_502687.1| Y37A1B.9 [Caenorhabditis elegans] 2.0E-41
blast CAB63232 Hypothetical protein H25K10.7 [Caenorhabditis elegans] ref|NP_502926.1| Serpentine Receptor, class W family member (srw-61) [Caenorhabditis elegans] 1.0E-32
blast AAF39999 Hypothetical protein ZK355.5 [Caenorhabditis elegans] ref|NP_494404.1| ZK355.5 [Caenorhabditis elegans] 9.0E-29
blast AAC68708 Serpentine receptor, class w protein 60 [Caenorhabditis elegans] ref|NP_494412.2| Serpentine Receptor, class W family member (srw-60) [Caenorhabditis elegans] 4.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.9E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000031185 4 13-35,88-110,130-152,172-191
Sequence
Target Sequence 
>C. ELEGANS:178567_AT
aaacagagcaggttctttccaaattaaaaataacagcaaactggacgccagcaatttatg
ttttcgtggagaaattatgaatttaatatctttacaattacgaggaaatttgaaagattg
tgcttccaaaccacccatcacaattcgttcgaacaaatatttgacacgagcaagaattcc
caatcttacacacgccatttcaaagacaagcaatacagttgtgatgtatgataatccatt
attgtttagcaataatcaagaatgcctgatgtatagaatttcatatgaaactaacgtgaa
cattgaaaatcaagattgcgaaatgattgtattcaatacatcacaaattgtcaagcttca
acacgtcatgttggttctagtttggaactttatgatcggagcgtctgtaaaaagtcttga
caaacttttcataaatctggcaatcctaaatgctatcgtccactgcgccattaatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACAGAGCAGGTTCTTTCCAAATT 467 127 384 Antisense
AACTGGACGCCAGCAATTTATGTTT 699 141 422 Antisense
AAAGATTGTGCTTCCAAACCACCCA 622 121 496 Antisense
AAGAATTCCCAATCTTACACACGCC 82 151 555 Antisense
TACACACGCCATTTCAAAGACAAGC 575 641 570 Antisense
AATTGTCAAGCTTCAACACGTCATG 499 179 729 Antisense
ACACGTCATGTTGGTTCTAGTTTGG 190 107 744 Antisense
GGAACTTTATGATCGGAGCGTCTGT 386 529 767 Antisense
ACTTTTCATAAATCTGGCAATCCTA 273 103 807 Antisense
CAATCCTAAATGCTATCGTCCACTG 93 183 824 Antisense
TATCGTCCACTGCGCCATTAATTTT 319 657 837 Antisense
Sequence Source Affymetrix Proprietary Database