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[178566_at]

Description F26A3.6 /REP_DB=WormBase Gene ID /WP=CE09671 /TR=Q93597 /GB=CAB01704.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 90      6grp_total > 04      4grp_total > 52      6grp_highest_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 254.5
(2.8)
P 		258.2
(3)
P 		193.1
(-0.2)
P 		134.3
(-3)
P 		124
B 172.2
(-0.1)
P 		275.5
(3)
P 		135.2
(-1.1)
P 		72.5
(-3)
P 		203
C 183.2
(0.7)
P 		259.4
(3)
P 		199.9
(1.2)
P 		64.5
(-3)
P 		195
avr 203.3
(0.9) 		264.4
(3) 		176.1
(-0) 		90.4
(-3) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 193
(3)
P 		181.1
(2.4)
P 		125.7
(-0.6)
P 		147.6
(0.5)
P 		113.7
(-1.3)
P 		81.9
(-3)
P 		111
B 281.4
(3)
P 		197.9
(0.6)
P 		123.5
(-1.6)
P 		120.8
(-1.7)
P 		127.3
(-1.5)
P 		75.4
(-3)
P 		206
C 204.8
(2.1)
P 		220.1
(3)
P 		148.9
(-1.1)
P 		179.5
(0.7)
P 		115
(-3)
P 		117.9
(-2.8)
P 		105
avr 226.4
(3) 		199.7
(1.8) 		132.7
(-1.2) 		149.3
(-0.4) 		118.7
(-1.8) 		91.7
(-3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 92.7
(3)
P 		56
(-0)
P 		50.5
(-0.5)
P 		19.7
(-3)
P 		73
B 54.9
(1.5)
P 		68
(3)
P 		31.3
(-1.2)
P 		15.4
(-3)
P 		53
C 60.6
(1.7)
P 		74.6
(3)
P 		69.7
(2.5)
P 		10.9
(-3)
P 		64
avr 69.4
(3) 		66.2
(2.6) 		50.5
(0.9) 		15.3
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 35.6
(-0.9)
P 		64.4
(3)
P 		27.4
(-2)
P 		37.4
(-0.6)
P 		34.3
(-1.1)
P 		19.9
(-3)
P 		45
B 97.9
(3)
P 		65.9
(0.2)
P 		30
(-2.8)
P 		32
(-2.7)
P 		51.7
(-1)
P 		28.1
(-3)
P 		70
C 75.9
(3)
P 		67.2
(1.7)
P 		37.9
(-2.7)
P 		36.1
(-3)
P 		37.2
(-2.8)
P 		39.5
(-2.5)
P 		40
avr 69.8
(3) 		65.8
(2.4) 		31.8
(-2.6) 		35.2
(-2.1) 		41.1
(-1.2) 		29.2
(-3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178566_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2125
Sequence Type Exemplar sequence
Representative Public ID F26A3.6 NCBI
Target Description F26A3.6 /REP_DB=WormBase Gene ID /WP=CE09671 /TR=Q93597 /GB=CAB01704.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059734 NCBI Caenorhabditis elegans F26A3.6 (F26A3.6) mRNA, complete cds. 11/11 None
SNAP00000002472 ENSEMBL cdna:SNAP chromosome:CEL140:I:7678453:7680840:-1 11/11 None
GENEFINDER00000002478 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7678453:7680840:-1 11/11 None
F26A3.6 ENSEMBL cdna:known chromosome:CEL140:I:7678453:7680840:-1 gene:F26A3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7678383-7680771(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A3.6
Entrez Gene 184955 Entrez gene
SwissProt Q93597 EMBL-EBI
WormBase CE09671 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01704 Hypothetical protein F26A3.6 [Caenorhabditis elegans] ref|NP_492135.1| F26A3.6 [Caenorhabditis elegans] 0.0
blast CAE57344 Hypothetical protein CBG00282 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492135.1 2 10-32,420-442
F26A3.6 2 10-32,420-442
SNAP00000002472 2 10-32,397-419
GENEFINDER00000002478 2 10-32,420-442
Sequence
Target Sequence 
>C. ELEGANS:178566_AT
gttgtcatccacttatggctgaacttattcattacgacccatcgtcttatcgtgatttct
tgctgcgagtaacccaaacaagtgtgtgcagcgttgatgcctatgacaactgtgctcgcc
gttacatagatctgacgagaattgaaaattgggaagaagatattccaaaggatcttcctg
gttatgaagacgcaaagaaatgtagaaatgataatcagagaagttgtttgatcacttcat
atccaggaacaattgaaggatatgatcttccggaagaatacagaaccactcaggattatg
tttcccgtttggttttggagtacagtactatgagaacaacagaaattctggtctccaaag
atccaaatatctatgaacttttgagttttattggatacaatatggctctatggtttacag
ttgggcatattttatggtcaatgttttggtatgcaactgggttatgttgtccaaaacgtc
aatcatcaaatagaatatcacctgaaatccgccggaaacgtagtgtttcgtcaccagaac
caattgtcgtcgagcatcggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGTCATCCACTTATGGCTGAACT 521 437 884 Antisense
GAACTTATTCATTACGACCCATCGT 641 349 904 Antisense
ACCCATCGTCTTATCGTGATTTCTT 524 89 920 Antisense
GTGATTTCTTGCTGCGAGTAACCCA 93 485 935 Antisense
TGATGCCTATGACAACTGTGCTCGC 39 567 978 Antisense
TGTGCTCGCCGTTACATAGATCTGA 265 557 994 Antisense
ACCACTCAGGATTATGTTTCCCGTT 472 85 1168 Antisense
ATGGCTCTATGGTTTACAGTTGGGC 600 51 1285 Antisense
ATATCACCTGAAATCCGCCGGAAAC 500 19 1378 Antisense
GTAGTGTTTCGTCACCAGAACCAAT 628 455 1403 Antisense
ACCAATTGTCGTCGAGCATCGGCCA 198 83 1422 Antisense
Sequence Source Affymetrix Proprietary Database