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[178565_at] 7TM receptor, srbc family

Description F40D4.7 /REP_DB=WormBase Gene ID /WP=CE19841 /TR=Q9XV31 /GB=CAB04363.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 18      6grp_cgc > 64      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 18.3
(-3)
A 		82.9
(0.2)
M 		26
(-2.6)
A 		138
(3)
A 		120
B 1.5
(-3)
A 		52.8
(1.5)
A 		36.3
(0.1)
A 		69.4
(3)
A 		68
C 43.6
(-1.9)
A 		63
(-1)
A 		20.5
(-3)
A 		148
(3)
P 		128
avr 21.1
(-3) 		66.2
(-0.2) 		27.6
(-2.6) 		118.5
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 5
(-2.8)
A 		5.3
(-2.7)
A 		31.8
(1.9)
A 		13.1
(-1.4)
A 		38.3
(3)
A 		3.8
(-3)
A 		35
B 3.3
(-3)
A 		36.6
(3)
A 		17.1
(-0.5)
A 		8.9
(-2)
A 		26.3
(1.1)
A 		15.3
(-0.8)
A 		33
C 5.3
(-3)
A 		38.2
(3)
A 		6.2
(-2.8)
A 		10.9
(-2)
A 		6.4
(-2.8)
A 		6.1
(-2.9)
A 		33
avr 4.5
(-3) 		26.7
(3) 		18.4
(0.8) 		11
(-1.2) 		23.7
(2.2) 		8.4
(-1.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6.7
(-3)
A 		18
(2)
M 		6.8
(-3)
A 		20.2
(3)
A 		14
B 0.5
(-3)
A 		13
(2.2)
A 		8.4
(0.3)
A 		14.8
(3)
A 		14
C 14.4
(-0.6)
A 		18.1
(0.7)
A 		7.1
(-3)
A 		25
(3)
P 		18
avr 7.2
(-3) 		16.4
(1.3) 		7.4
(-2.9) 		20
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.9
(-2.4)
A 		6.9
(0.4)
A 		3.3
(-1.7)
A 		11.6
(3)
A 		0.9
(-3)
A 		11
B 1.1
(-3)
A 		12.2
(3)
A 		4.2
(-1.3)
A 		2.3
(-2.4)
A 		10.7
(2.2)
A 		5.7
(-0.5)
A 		11
C 2
(-2.8)
A 		11.6
(3)
A 		1.6
(-3)
A 		2.2
(-2.6)
A 		2.1
(-2.7)
A 		2.1
(-2.7)
A 		10
avr 1.3
(-3) 		8.6
(3) 		4.2
(-0.6) 		2.6
(-1.9) 		8.1
(2.6) 		2.9
(-1.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12949
Sequence Type Exemplar sequence
Representative Public ID F40D4.7 NCBI
Target Description F40D4.7 /REP_DB=WormBase Gene ID /WP=CE19841 /TR=Q9XV31 /GB=CAB04363.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074944(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074944 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-26) (srbc-26) mRNA, complete cds. 11/11 None
GENEFINDER00000026453 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17173898:17175891:1 11/11 None
F40D4.7 ENSEMBL cdna:known chromosome:CEL140:V:17174429:17175891:1 gene:F40D4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028654 3/11 Cross Hyb Matching Probes None
GENEFINDER00000027638 4/11 Cross Hyb Matching Probes None
F20E11.15 3/11 Cross Hyb Matching Probes None
F20E11.16 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17173897-17175891(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-26
Ensembl F40D4.7
Entrez Gene 185525 Entrez gene
SwissProt Q9XV31 EMBL-EBI
WormBase CE38072 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04363 Hypothetical protein F40D4.7 [Caenorhabditis elegans] ref|NP_507345.2| Serpentine Receptor, class BC (class B-like) family member (srbc-26) [Caenorhabditis elegans] 1.0E-154
blast CAI58634 Hypothetical protein F20E11.15 [Caenorhabditis elegans] ref|NP_001023825.1| Serpentine Receptor, class BC (class B-like) family member (srbc-27) [Caenorhabditis elegans] 1.0E-133
blast CAB04366 Hypothetical protein F40D4.6 [Caenorhabditis elegans] ref|NP_507346.1| Serpentine Receptor, class BC (class B-like) family member (srbc-25) [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 5.7E-59
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 5.7E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507345.2 6 10-32,45-67,82-104,125-147,179-198,218-240
F40D4.7 6 10-32,45-67,82-104,125-147,179-198,218-240
GENEFINDER00000026453 6 45-67,79-101,116-138,159-181,213-232,252-274
Sequence
Target Sequence 
>C. ELEGANS:178565_AT
tgacccttacgatctccgttgaaagagttatagcagtttgcacaccactgatttttcggt
actatcgtccaatgattccgaataatgtgattctaactctaatattgttttacggtctgt
tcgagtatttcattttgtatgtcatttgcaattaccaattaaatgtaccgtacaattgtg
tgaacgttggttgtgccatgaattcatgctttcgtcaatatttccggccgttgaaattaa
ttatatatggccccactttattgttcgcaatcattttatcatttaagttaatctgcaaag
caaataaaactaaaaacaacgatgctaccatgaacagggtagcagcaaatcgactcgcgc
tgattgatgttataattatattcttttttgatgttctgctgagcatttttttgaccgtct
ttgaccaaaataatctgctcactaactctggaccatttgcatcagtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACCCTTACGATCTCCGTTGAAAG 224 563 413 Antisense
GTTTGCACACCACTGATTTTTCGGT 588 451 448 Antisense
GATTTTTCGGTACTATCGTCCAATG 662 427 462 Antisense
ACGGTCTGTTCGAGTATTTCATTTT 296 93 524 Antisense
CATGCTTTCGTCAATATTTCCGGCC 383 211 617 Antisense
ATATATGGCCCCACTTTATTGTTCG 296 17 655 Antisense
AGGGTAGCAGCAAATCGACTCGCGC 641 57 748 Antisense
TCGACTCGCGCTGATTGATGTTATA 114 603 762 Antisense
TGAGCATTTTTTTGACCGTCTTTGA 207 569 812 Antisense
ATAATCTGCTCACTAACTCTGGACC 472 25 842 Antisense
ACTCTGGACCATTTGCATCAGTTTT 640 99 857 Antisense
Sequence Source Affymetrix Proprietary Database