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[178564_at]

Description B0379.6 /REP_DB=WormBase Gene ID /WP=CE07729 /TR=O45221 /GB=CAB05890.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 24      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.9
(-3)
A 		3.3
(-1.7)
A 		7.4
(2.2)
A 		8.3
(3)
A 		6
B 2.8
(-2.8)
A 		2.7
(-3)
A 		5.4
(3)
A 		3.2
(-1.9)
A 		3
C 2.2
(-3)
A 		4.5
(0.7)
A 		3
(-1.7)
A 		5.9
(3)
A 		4
avr 2.3
(-3) 		3.5
(-0.9) 		5.3
(2.1) 		5.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3.8
(-2.1)
A 		2.3
(-3)
A 		2.6
(-2.8)
A 		3.3
(-2.4)
A 		9.1
(1.3)
A 		11.9
(3)
A 		10
B 3.2
(-2.5)
A 		3
(-2.7)
A 		5.8
(-0.3)
A 		2.6
(-3)
A 		9.8
(3)
A 		3.9
(-1.9)
A 		7
C 2.7
(-2.4)
A 		5.5
(3)
A 		2.4
(-3)
A 		5.2
(2.4)
A 		4.6
(1.3)
A 		4.6
(1.3)
A 		3
avr 3.2
(-3) 		3.6
(-2.5) 		3.6
(-2.5) 		3.7
(-2.3) 		7.8
(3) 		6.8
(1.7) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(-3)
A 		0.7
(-3)
A 		1.9
(3)
A 		1.2
(-0.5)
A 		1
B 0.9
(-1)
A 		0.7
(-3)
A 		1.3
(3)
A 		0.7
(-3)
A 		1
C 0.7
(-3)
A 		1.3
(3)
A 		1.1
(1)
A 		1
(0)
A 		1
avr 0.8
(-3) 		0.9
(-2) 		1.4
(3) 		1
(-1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.7
(-2.7)
A 		0.8
(-2.5)
A 		0.6
(-3)
A 		0.8
(-2.5)
A 		2.7
(2.5)
A 		2.9
(3)
A 		2
B 1.1
(-2.3)
A 		1
(-2.5)
A 		1.4
(-1.7)
A 		0.7
(-3)
A 		4
(3)
A 		1.5
(-1.5)
A 		3
C 1
(-0.8)
A 		1.7
(3)
A 		0.6
(-3)
A 		1
(-0.8)
A 		1.5
(1.9)
A 		1.5
(1.9)
A 		1
avr 0.9
(-2.7) 		1.2
(-1.7) 		0.9
(-2.7) 		0.8
(-3) 		2.7
(3) 		2
(0.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2047
Sequence Type Exemplar sequence
Representative Public ID B0379.6 NCBI
Target Description B0379.6 /REP_DB=WormBase Gene ID /WP=CE07729 /TR=O45221 /GB=CAB05890.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060263(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060263 NCBI Caenorhabditis elegans B0379.6 (B0379.6) mRNA, complete cds. 11/11 None
SNAP00000021512 ENSEMBL cdna:SNAP chromosome:CEL140:I:10105437:10105897:1 11/11 None
B0379.6 ENSEMBL cdna:known chromosome:CEL140:I:10105437:10105897:1 gene:B0379.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10105367-10105828(+) 76.79 100.0
Public Domain and Genome References
Gene Title
Ensembl B0379.6
Entrez Gene 181946 Entrez gene
SwissProt O45221 EMBL-EBI
WormBase CE07729 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05890 Hypothetical protein B0379.6 [Caenorhabditis elegans] ref|NP_492664.1| B0379.6 [Caenorhabditis elegans] 4.0E-45
Sequence
Target Sequence 
>C. ELEGANS:178564_AT
caaccggggcggtgtgtatcttggtttgtggaggcaaaaaagagcccatctgatgaaggg
agggaggcggttgacgagaaactgtgttggatgtggaggctcacgggcaccagagacgac
gatagacgacgcaagaacagagaacgccacgagagatgtcacttcagatgttcttcagtt
tgggtgcagccttctgagagttattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCGGGGCGGTGTGTATCTTGGT 50 145 132 Antisense
GTGTGTATCTTGGTTTGTGGAGGCA 702 487 143 Antisense
GATGAAGGGAGGGAGGCGGTTGACG 99 405 183 Antisense
GGCGGTTGACGAGAAACTGTGTTGG 386 495 197 Antisense
TTGGATGTGGAGGCTCACGGGCACC 245 709 218 Antisense
TCACGGGCACCAGAGACGACGATAG 313 621 232 Antisense
GAGACGACGATAGACGACGCAAGAA 402 393 244 Antisense
GACGCAAGAACAGAGAACGCCACGA 605 379 259 Antisense
AACGCCACGAGAGATGTCACTTCAG 686 145 274 Antisense
ATGTTCTTCAGTTTGGGTGCAGCCT 641 47 299 Antisense
GGGTGCAGCCTTCTGAGAGTTATTG 26 497 313 Antisense
Sequence Source Affymetrix Proprietary Database