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[178563_at]

Description T16G1.6 /REP_DB=WormBase Gene ID /WP=CE20076 /TR=Q9XUP2 /GB=CAB04733.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 38      6grp_total > 30      4grp_total > 42      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 228.5
(-3)
P 		279.7
(2.9)
M 		280.2
(3)
P 		237.8
(-1.9)
P 		52
B 213.3
(-0.8)
P 		280.3
(3)
P 		173.1
(-3)
P 		202.7
(-1.3)
P 		107
C 200.6
(-3)
P 		252
(-0.1)
P 		308.1
(3)
P 		283.2
(1.6)
P 		108
avr 214.1
(-3) 		270.7
(3) 		253.8
(1.2) 		241.2
(-0.1) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 148.5
(-0.7)
A 		212
(0.6)
P 		328.4
(3)
P 		248.4
(1.4)
P 		98.5
(-1.7)
A 		35.2
(-3)
A 		293
B 161.1
(-1.1)
M 		262.5
(2)
P 		295
(3)
P 		173.5
(-0.7)
P 		128.4
(-2.1)
P 		98
(-3)
M 		197
C 183.6
(-0.1)
A 		305
(3)
P 		278.2
(2.3)
P 		167.1
(-0.5)
P 		98.9
(-2.2)
A 		67.9
(-3)
A 		237
avr 164.4
(-0.5) 		259.8
(2) 		300.5
(3) 		196.3
(0.3) 		108.6
(-1.9) 		67
(-3) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 83.2
(3)
P 		60.7
(0.2)
M 		73.2
(1.8)
P 		34.8
(-3)
P 		48
B 68
(2.8)
P 		69.2
(3)
P 		40.1
(-3)
P 		43.2
(-2.4)
P 		29
C 66.4
(-1.1)
P 		72.4
(-0.5)
P 		107.4
(3)
P 		47.8
(-3)
P 		60
avr 72.5
(2.8) 		67.4
(1.8) 		73.6
(3) 		41.9
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 27.4
(-1.3)
A 		75.4
(3)
P 		71.5
(2.6)
P 		63
(1.9)
P 		29.7
(-1.1)
A 		8.6
(-3)
A 		67
B 56.1
(-0.7)
M 		87.4
(3)
P 		71.6
(1.1)
P 		45.9
(-1.9)
P 		52.2
(-1.1)
P 		36.5
(-3)
M 		51
C 68.1
(0.9)
A 		93.1
(3)
P 		70.8
(1.1)
P 		33.6
(-2.1)
P 		32
(-2.2)
A 		22.7
(-3)
A 		70
avr 50.5
(-0.3) 		85.3
(3) 		71.3
(1.7) 		47.5
(-0.6) 		38
(-1.5) 		22.6
(-3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14701
Sequence Type Exemplar sequence
Representative Public ID T16G1.6 NCBI
Target Description T16G1.6 /REP_DB=WormBase Gene ID /WP=CE20076 /TR=Q9XUP2 /GB=CAB04733.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073833(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073833 NCBI Caenorhabditis elegans T16G1.6 (T16G1.6) mRNA, complete cds. 11/11 None
SNAP00000020367 ENSEMBL cdna:SNAP chromosome:CEL140:V:12938172:12939749:-1 11/11 None
GENEFINDER00000020381 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12935625:12939749:-1 11/11 None
T16G1.6 ENSEMBL cdna:known chromosome:CEL140:V:12938172:12939749:-1 gene:T16G1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12938171-12939749(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G1.6
Entrez Gene 188554 Entrez gene
SwissProt Q9XUP2 EMBL-EBI
WormBase CE36202 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04733 Hypothetical protein T16G1.6 [Caenorhabditis elegans] ref|NP_506234.2| T16G1.6 [Caenorhabditis elegans] 0.0
blast CAB63314 Hypothetical protein T16G1.7 [Caenorhabditis elegans] ref|NP_506233.1| T16G1.7 [Caenorhabditis elegans] 0.0
blast CAE64714 Hypothetical protein CBG09500 [Caenorhabditis briggsae] 0.0
blast AAG24128 Hypothetical protein F48G7.12 [Caenorhabditis elegans] ref|NP_503277.2| F48G7.12 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.6E-5
Sequence
Target Sequence 
>C. ELEGANS:178563_AT
gtacatggtgatctttgggcagccaatattttatggaatgaaaacgatggaaagttttcc
gcaagcaaggttattgattatcagattattcacatgggaaacccagctgaggacttggtt
cgagttttcctctgtacactctccggagcagatcgacaagctcattgggaaaagcttctt
gagcaattctacgaatatttccttgaagcccttgaagataatgagattccgtacactctt
gatcagcttaaagaatcttatcgtttgtactttgtaaccggaagtcttgtaatgttgcca
ctgtacggaccaattgcgcagacaaaactatcatactcaaaggataccgaacatgtcgag
gaatatcgtgaaatcttgactgaaaaagctgaaaaacttcttgaagatatggagcattgg
catttttacagcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACATGGTGATCTTTGGGCAGCCA 16 461 877 Antisense
GAAAGTTTTCCGCAAGCAAGGTTAT 642 347 926 Antisense
GAAACCCAGCTGAGGACTTGGTTCG 275 359 974 Antisense
TGGTTCGAGTTTTCCTCTGTACACT 514 551 992 Antisense
GTACACTCTCCGGAGCAGATCGACA 203 461 1010 Antisense
AAAGCTTCTTGAGCAATTCTACGAA 26 125 1047 Antisense
ATATTTCCTTGAAGCCCTTGAAGAT 486 19 1071 Antisense
TTCCGTACACTCTTGATCAGCTTAA 173 699 1103 Antisense
GGAAGTCTTGTAATGTTGCCACTGT 590 531 1156 Antisense
GCCACTGTACGGACCAATTGCGCAG 627 277 1173 Antisense
GGAGCATTGGCATTTTTACAGCAGA 266 521 1287 Antisense
Sequence Source Affymetrix Proprietary Database