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[178562_at]

Description F56G4.6 /REP_DB=WormBase Gene ID /WP=CE18760 /TR=Q9XUY0 /GB=CAB04488.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      6grp_highest_nonorm > 90      6grp_total > 01      4grp_total > 52      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 140.4
(0.9)
P 		186.9
(3)
P 		136.6
(0.7)
P 		53
(-3)
A 		134
B 153
(3)
P 		133.9
(1.8)
P 		111.7
(0.5)
P 		55.3
(-3)
A 		98
C 155.5
(3)
P 		126.4
(-3)
P 		127.7
(-2.7)
P 		128.3
(-2.6)
A 		29
avr 149.6
(3) 		149.1
(3) 		125.3
(0.9) 		78.9
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 118
(-1.5)
P 		168.9
(3)
P 		100.7
(-3)
P 		104.3
(-2.7)
P 		160.7
(2.3)
P 		142.8
(0.7)
P 		68
B 143.2
(0.1)
P 		180.9
(3)
P 		101.6
(-3)
P 		135.5
(-0.4)
P 		161.7
(1.5)
P 		128
(-1)
P 		79
C 126.7
(-0.4)
P 		160.3
(3)
P 		129.8
(-0.1)
P 		144.6
(1.4)
P 		101.1
(-3)
P 		132.7
(0.2)
P 		59
avr 129.3
(-1.1) 		170
(3) 		110.7
(-3) 		128.1
(-1.2) 		141.2
(0.1) 		134.5
(-0.6) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 51.1
(3)
P 		40.6
(1.5)
P 		35.7
(0.9)
P 		7.8
(-3)
A 		43
B 48.8
(3)
P 		33.1
(0.5)
P 		25.9
(-0.7)
P 		11.8
(-3)
A 		37
C 51.5
(3)
P 		36.3
(-0.1)
P 		44.5
(1.6)
P 		21.6
(-3)
A 		30
avr 50.5
(3) 		36.7
(0.8) 		35.4
(0.5) 		13.7
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 21.7
(-3)
P 		60.1
(3)
P 		21.9
(-3)
P 		26.5
(-2.3)
P 		48.5
(1.2)
P 		34.8
(-1)
P 		38
B 49.8
(0.7)
P 		60.2
(2.2)
P 		24.7
(-3)
P 		35.9
(-1.4)
P 		65.7
(3)
P 		47.7
(0.4)
P 		41
C 47
(2.4)
P 		48.9
(3)
P 		33
(-1.8)
P 		29.1
(-3)
P 		32.7
(-1.9)
P 		44.4
(1.6)
P 		20
avr 39.5
(-0.4) 		56.4
(3) 		26.5
(-3) 		30.5
(-2.2) 		49
(1.5) 		42.3
(0.2) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178562_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1573
Sequence Type Exemplar sequence
Representative Public ID F56G4.6 NCBI
Target Description F56G4.6 /REP_DB=WormBase Gene ID /WP=CE18760 /TR=Q9XUY0 /GB=CAB04488.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060510(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060510 NCBI Caenorhabditis elegans F56G4.6 (F56G4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000039539 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11369271:11382442:-1 11/11 None
F56G4.6 ENSEMBL cdna:known chromosome:CEL140:I:11372477:11382156:-1 gene:F56G4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11372440-11382087(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56G4.6
Entrez Gene 186409 Entrez gene
SwissProt Q9XUY0 EMBL-EBI
WormBase CE34323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04488 Hypothetical protein F56G4.6 [Caenorhabditis elegans] ref|NP_492911.2| F56G4.6 [Caenorhabditis elegans] 0.0
blast CAE63559 Hypothetical protein CBG08045 [Caenorhabditis briggsae] 0.0
blast CAI79202 Hypothetical protein F56G4.7 [Caenorhabditis elegans] ref|NP_001021510.1| F56G4.7 [Caenorhabditis elegans] 1.0E-86
Sequence
Target Sequence 
>C. ELEGANS:178562_AT
gatttgatttcctcaatcctgagccgcccatccaccgatttttccatctccggatttcaa
atgattctttattttttcacacgatttcatattggatcaatggaattttatccatataat
catcttctcattatcactaaaatcatcaatttctgccattggagcattcgaaaattcgcg
aaagagcccatgattctgagcatttcagttgatgcgatttgtggatttttaccgtggagt
tatctgagtgaaattgctctaaatgggcttgaagttgagaatgatcctgtggagcagttg
attgctcaaaatttgaagcacaatcgattttgtgtgctgctcgcggagcacgacaaacag
gacacctacctgaccatcgaagactttgaaaaactcccgaaatctgaatttatcgttgag
attttacggaaaaaagacgctggaaatggtcaaaaatggaaaaatcaatatccgccacgt
ggatttttggataacctcatggaatctttcgcggccaccaattcctgcataaatccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTGATTTCCTCAATCCTGAGCC 629 427 1543 Antisense
CGATTTTTCCATCTCCGGATTTCAA 229 249 1578 Antisense
GATTCTTTATTTTTTCACACGATTT 381 431 1605 Antisense
TTATCCATATAATCATCTTCTCATT 410 681 1650 Antisense
CAATTTCTGCCATTGGAGCATTCGA 220 181 1689 Antisense
AAGAGCCCATGATTCTGAGCATTTC 564 153 1724 Antisense
CAATCGATTTTGTGTGCTGCTCGCG 687 179 1863 Antisense
GGAGCACGACAAACAGGACACCTAC 575 519 1887 Antisense
CCTACCTGACCATCGAAGACTTTGA 156 269 1907 Antisense
ATAACCTCATGGAATCTTTCGCGGC 400 25 2033 Antisense
CCACCAATTCCTGCATAAATCCGGA 215 273 2057 Antisense
Sequence Source Affymetrix Proprietary Database