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[178561_at]

Description Y6B3B.4 /REP_DB=WormBase Gene ID /WP=CE24577 /TR=Q9U1T0 /GB=CAB60457.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 06      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 43.9
(-1.5)
A 		64.7
(1.9)
A 		71.3
(3)
A 		34.5
(-3)
A 		37
B 39.2
(-3)
A 		48.2
(2)
A 		49.9
(3)
A 		48.5
(2.2)
A 		11
C 70.5
(1.6)
A 		24
(-3)
A 		26.3
(-2.8)
A 		84.1
(3)
A 		60
avr 51.2
(0.3) 		45.6
(-3) 		49.2
(-0.9) 		55.7
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 77.7
(3)
A 		42.4
(-1.5)
A 		58.1
(0.5)
A 		30.4
(-3)
A 		39.4
(-1.9)
A 		43.9
(-1.3)
A 		47
B 25.7
(-1.1)
A 		31.7
(0.5)
A 		31.7
(0.5)
A 		18.5
(-3)
A 		38.5
(2.3)
A 		41.3
(3)
A 		23
C 46.2
(2)
A 		53.7
(3)
A 		20.9
(-1.3)
A 		38.1
(0.9)
A 		8.4
(-3)
A 		34.9
(0.5)
A 		45
avr 49.9
(3) 		42.6
(0.9) 		36.9
(-0.7) 		29
(-2.9) 		28.8
(-3) 		40
(0.2) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16
(1.8)
A 		14
(0.9)
A 		18.7
(3)
A 		5.1
(-3)
A 		14
B 12.5
(3)
A 		11.9
(1.4)
A 		11.6
(0.5)
A 		10.3
(-3)
A 		2
C 23.3
(3)
A 		6.9
(-3)
A 		9.2
(-2.2)
A 		14.2
(-0.3)
A 		16
avr 17.3
(3) 		10.9
(-2.2) 		13.2
(-0.3) 		9.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 14.3
(2.4)
A 		15.1
(3)
A 		12.7
(1.1)
A 		7.7
(-3)
A 		11.9
(0.4)
A 		10.7
(-0.6)
A 		7
B 8.9
(-0.8)
A 		10.6
(0.2)
A 		7.7
(-1.4)
A 		4.9
(-3)
A 		15.6
(3)
A 		15.4
(2.9)
A 		11
C 17.1
(3)
A 		16.4
(2.7)
A 		5.3
(-1.9)
A 		7.7
(-0.9)
A 		2.7
(-3)
A 		11.7
(0.8)
A 		14
avr 13.4
(2.5) 		14
(3) 		8.6
(-1.5) 		6.8
(-3) 		10.1
(-0.3) 		12.6
(1.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178561_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1935
Sequence Type Exemplar sequence
Representative Public ID Y6B3B.4 NCBI
Target Description Y6B3B.4 /REP_DB=WormBase Gene ID /WP=CE24577 /TR=Q9U1T0 /GB=CAB60457.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061008 NCBI Caenorhabditis elegans Y6B3B.4 (Y6B3B.4) mRNA, complete cds. 11/11 None
GENEFINDER00000043763 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13764855:13777109:1 11/11 None
SNAP00000043754 ENSEMBL cdna:SNAP chromosome:CEL140:I:13765159:13777109:1 10/11 None
Y6B3B.4 ENSEMBL cdna:known chromosome:CEL140:I:13767740:13775096:1 gene:Y6B3B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13767670-13775027(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y6B3B.4
Entrez Gene 189368 Entrez gene
SwissProt Q9U1T0 EMBL-EBI
WormBase CE24577 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27748.1.S1_S_AT similar to zinc finger protein 291 cfa
HG-U133_PLUS_2:216399_S_AT zinc finger protein 291 hs
HG-U133A_2:216399_S_AT zinc finger protein 291 hs
HG-U133A:216399_S_AT zinc finger protein 291 hs
HG-U133_PLUS_2:215848_AT zinc finger protein 291 hs
HG-U133A_2:215848_AT zinc finger protein 291 hs
HG-U133A:215848_AT zinc finger protein 291 hs
HG-U133A:209741_X_AT zinc finger protein 291 hs
HG-U133_PLUS_2:209741_X_AT zinc finger protein 291 hs
HG-U133A_2:209741_X_AT zinc finger protein 291 hs
HU35KSUBB:RC_R50931_AT zinc finger protein 291 hs
HU35KSUBC:RC_AA160056_AT zinc finger protein 291 hs
U133_X3P:HS.285848.2.A1_3P_S_AT zinc finger protein 291 hs
U133_X3P:HS.285848.1.A1_3P_AT zinc finger protein 291 hs
HG-U95AV2:40937_AT zinc finger protein 291 hs
HG-U95C:59521_AT zinc finger protein 291 hs
HU35KSUBC:RC_N47807_AT Zinc finger protein 291 hs
U133_X3P:HS2.46767.1.S1_3P_S_AT Zinc finger protein 291 hs
U133_X3P:HS2.46767.1.S1_3P_AT Zinc finger protein 291 hs
HG-U133_PLUS_2:1560989_AT Zinc finger protein 291 hs
HG-U133_PLUS_2:1560990_A_AT Zinc finger protein 291 hs
HG-U95C:64604_R_AT Zinc finger protein 291 hs
HG-U95D:79941_AT Zinc finger protein 291 hs
HG-U95AV2:31368_AT Zinc finger protein 291 hs
HG-U95AV2:39480_S_AT Zinc finger protein 291 hs
HG-U95B:41905_AT Zinc finger protein 291 hs
HG-U95C:63762_AT Zinc finger protein 291 hs
HU35KSUBC:RC_N73755_AT Zinc finger protein 291 hs
HU35KSUBC:RC_N68152_AT Zinc finger protein 291 hs
RAE230A:1371093_AT zinc finger protein 291 rn
RAT230_2:1371093_AT zinc finger protein 291 rn
RAE230A:1371520_AT zinc finger protein 291 rn
RAT230_2:1371520_AT zinc finger protein 291 rn
RG-U34C:RC_AI071787_AT Zinc finger protein 291 rn
Protein Similarities
Method ID Description E-Value
blast CAB60457 Hypothetical protein Y6B3B.4 [Caenorhabditis elegans] ref|NP_493409.1| Y6B3B.4 [Caenorhabditis elegans] 0.0
blast CAE68026 Hypothetical protein CBG13642 [Caenorhabditis briggsae] 0.0
blast CAE68026 Hypothetical protein CBG13642 [Caenorhabditis briggsae] 1.0E-136
blast CAH60798 Hypothetical protein Y6B3B.12 [Caenorhabditis elegans] ref|NP_001021800.1| Y6B3B.12 [Caenorhabditis elegans] 1.0E-128
blast CAH60798 Hypothetical protein Y6B3B.12 [Caenorhabditis elegans] ref|NP_001021800.1| Y6B3B.12 [Caenorhabditis elegans] 1.0E-106
blast CAE68026 Hypothetical protein CBG13642 [Caenorhabditis briggsae] 7.0E-99
Sequence
Target Sequence 
>C. ELEGANS:178561_AT
aataagcaactggccgacgaacgtgcccgaaaacatgaggaaaaagcggcgaaaaaacga
gaacaggaggctgcggcgactgctcggcgagctcaagcagctgagcaacgacagtgtaga
atacggaagctcagtgagcaaaaagagattagacacgggaagaaagaaaatcctgctcca
agtgctccagaagacatgctccagtacctgaattccctgttgctcacggagcccgtcaat
tctgagccactaccgtatctctggccgagcaccgagcacttggcaccacgccaatgctcc
ctatgctccgccgtttctacagtaatccactcggatctcgacgcgatttctcatgttttg
tgctcaaaagagcaccaaattcaagcgaaaactctcacatctggaagtatgattgaagag
ctcaaacgtcacttttttggaattttcaaggaggttactgtaggtgatggcgtggca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAAGCAACTGGCCGACGAACGTG 448 169 1123 Antisense
GACGAACGTGCCCGAAAACATGAGG 271 379 1138 Antisense
CGAGAACAGGAGGCTGCGGCGACTG 256 251 1180 Antisense
TCCAAGTGCTCCAGAAGACATGCTC 640 587 1299 Antisense
GACATGCTCCAGTACCTGAATTCCC 12 371 1315 Antisense
CTCACGGAGCCCGTCAATTCTGAGC 590 227 1345 Antisense
CAGTAATCCACTCGGATCTCGACGC 513 207 1442 Antisense
ATCTCGACGCGATTTCTCATGTTTT 464 33 1457 Antisense
TCAAGCGAAAACTCTCACATCTGGA 80 633 1503 Antisense
AGAGCTCAAACGTCACTTTTTTGGA 398 69 1539 Antisense
GGTTACTGTAGGTGATGGCGTGGCA 185 507 1575 Antisense
Sequence Source Affymetrix Proprietary Database