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[178560_at]

Description F55G7.2 /REP_DB=WormBase Gene ID /WP=CE03424 /TR=Q20856 /GB=CAA90610.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 56      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 26.8
(0.2)
A 		14.2
(-3)
A 		32.4
(1.6)
A 		38
(3)
A 		24
B 28.2
(-1.4)
A 		82.3
(3)
A 		8
(-3)
A 		10.5
(-2.8)
A 		74
C 13.3
(-3)
A 		56.3
(-0.2)
A 		14.7
(-2.9)
A 		105.5
(3)
A 		92
avr 22.8
(-2.2) 		50.9
(2.9) 		18.4
(-3) 		51.3
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 12.1
(-2.7)
A 		19.1
(-2.2)
A 		93.7
(3)
A 		10.5
(-2.8)
A 		7.3
(-3)
A 		77.4
(1.9)
A 		86
B 53.4
(1)
A 		10.5
(-3)
A 		34.5
(-0.8)
A 		74
(2.9)
P 		31.5
(-1.1)
A 		75.6
(3)
P 		65
C 52.1
(0)
A 		84.8
(3)
A 		20.1
(-2.8)
A 		18.4
(-3)
A 		22
(-2.7)
A 		64.6
(1.2)
A 		66
avr 39.2
(-0.8) 		38.1
(-1) 		49.4
(0.3) 		34.3
(-1.4) 		20.3
(-3) 		72.5
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9.8
(3)
A 		3.1
(-3)
A 		8.5
(1.8)
A 		5.6
(-0.8)
A 		7
B 9
(-0.7)
A 		20.3
(3)
A 		1.9
(-3)
A 		2.2
(-2.9)
A 		18
C 4.4
(-3)
A 		16.2
(2.3)
A 		5.1
(-2.7)
A 		17.8
(3)
A 		13
avr 7.7
(-1.1) 		13.2
(3) 		5.2
(-3) 		8.5
(-0.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 2.2
(-3)
A 		6.8
(-1.5)
A 		20.4
(3)
A 		2.7
(-2.8)
A 		2.2
(-3)
A 		18.8
(2.5)
A 		18
B 18.6
(0.7)
A 		3.5
(-3)
A 		8.4
(-1.8)
A 		19.6
(0.9)
P 		12.8
(-0.7)
A 		28.2
(3)
P 		25
C 19.3
(1.2)
A 		25.9
(3)
A 		5.1
(-2.6)
A 		3.7
(-3)
A 		7.1
(-2.1)
A 		21.6
(1.8)
A 		22
avr 13.4
(-0.7) 		12.1
(-1.2) 		11.3
(-1.5) 		8.7
(-2.5) 		7.4
(-3) 		22.9
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 178560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16392
Sequence Type Exemplar sequence
Representative Public ID F55G7.2 NCBI
Target Description F55G7.2 /REP_DB=WormBase Gene ID /WP=CE03424 /TR=Q20856 /GB=CAA90610.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077596 NCBI Caenorhabditis elegans F55G7.2 (F55G7.2) mRNA, complete cds. 11/11 None
SNAP00000016060 ENSEMBL cdna:SNAP chromosome:CEL140:X:11929820:11931507:-1 11/11 None
GENEFINDER00000016066 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11929820:11931567:-1 11/11 None
F55G7.2 ENSEMBL cdna:known chromosome:CEL140:X:11929820:11931567:-1 gene:F55G7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11929819-11931567(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G7.2
Entrez Gene 186332 Entrez gene
SwissProt Q20856 EMBL-EBI
WormBase CE03424 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90610 Hypothetical protein F55G7.2 [Caenorhabditis elegans] ref|NP_509997.1| F55G7.2 [Caenorhabditis elegans] 0.0
blast NP_740808 Y39G10AR.18a [Caenorhabditis elegans] gb|AAT39977.2| Hypothetical protein Y39G10AR.18a [Caenorhabditis elegans] 3.0E-69
blast CAE60379 Hypothetical protein CBG03980 [Caenorhabditis briggsae] 4.0E-64
Sequence
Target Sequence 
>C. ELEGANS:178560_AT
ggacagctcgtttgttttgttgcagcatattcaaaggttaaaaaagctgtgggaattgaa
ctctcgtcagtgccagcagaatatgcagtttcgcaaggaatgtactttaagaatttaatg
accttctttgacaagcaacatggagagatagaactgattcaaggagattttcttcatcca
cagtttcatgatctaatttgcaaggaggcgactgttattttcataaacaactatgcattt
gaagatgatctcacaagacgaattgtatttgaacttctgcaaaactgtgctgatggaacg
cgtattgtttcagcaaaaccactgagcctgccaagatcagtagcctctagacgtcatgct
atgtcggattttggttctatgtctaattcaagaaccctccgagcaactgaatcaaatgtt
tcctggacctccaacatagtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACAGCTCGTTTGTTTTGTTGCAG 39 527 574 Antisense
AAGCTGTGGGAATTGAACTCTCGTC 221 151 617 Antisense
AACTCTCGTCAGTGCCAGCAGAATA 112 141 632 Antisense
GAGATTTTCTTCATCCACAGTTTCA 535 397 737 Antisense
TTCAGCAAAACCACTGAGCCTGCCA 597 685 882 Antisense
GAGCCTGCCAAGATCAGTAGCCTCT 600 385 897 Antisense
GCCTCTAGACGTCATGCTATGTCGG 226 281 916 Antisense
ATGTCGGATTTTGGTTCTATGTCTA 309 49 934 Antisense
TGTCTAATTCAAGAACCCTCCGAGC 273 559 953 Antisense
AACCCTCCGAGCAACTGAATCAAAT 697 145 966 Antisense
TGTTTCCTGGACCTCCAACATAGTC 455 559 990 Antisense
Sequence Source Affymetrix Proprietary Database